Hippoglossus hippoglossus (Atlantic halibut): 117771835
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Entry
117771835 CDS
T07778
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117771835 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117771835 (nup54)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117771835 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
FAM92
Motif
Other DBs
NCBI-GeneID:
117771835
NCBI-ProteinID:
XP_034458521
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All DBs
Position
12:8197819..8207649
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AA seq
621 aa
AA seq
DB search
MAFNFGGAAGSTAASAPGFSFGSFGAKTTASTAFGFGPSATTTTASSGFGTLTAPGFGAA
TTTAAAPATGFGFGSTNTGFGGLGAGNTTAGGFSFGGFGLNANPAAISFNVGCFGTATTT
GTIFNFGNSLASTGTFGGFGTTTTTAAAPGSTFSFAAPSNTAGGLFGNTQNKGFGFSSGL
GTATAPGTTGFGTSLGTSGLGGFGGFNIQSTQQQQGGLFGQQQSQAQPTQLYQQVTALSA
PTLLGDERDSILAKWNQLQAYWGTGKGYYSNNNPPVDFTQENPFCRFKAVGYSCVPVSKD
EDGLVVLILVRKEADVRVQQQHLVESLHKVLGNNQTLTVNVDGVKALPNDQTEVVIYVVE
RSLNGTSKRIPATTLFVFLEQGNVKVQLSQIGVAMSLTRTELSPAQLKQLLQNAPAGVDP
IIWEQAKVDNPDPDKLIPVPMVGFKELLRRLQIQDQMTKQHQTRVDIISNDISELQKNQA
TTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDEEHLRVQLDTIQSELNAPTQ
FKGRLNELMSQIRMQNHFGAVRSEERYSVDADLLREIKQHLKQQQDGLSHLISVIKDDLE
DIKLIEHGLSDSGHLRGGILS
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttaattttggcggtgccgcgggcagcacagcggcaagcgcccccgggttttca
ttcggttcatttggtgcaaagaccacagcatccacagcgtttggctttggcccctcagcc
accaccaccacagcctcatccggatttggcactcttacagcccctggctttggggcagcc
accaccactgctgctgcaccagccaccggatttggttttggctccaccaacactggattt
ggggggctgggagctggaaacaccacggctggtgggtttagttttggggggtttggttta
aatgccaacccggcagcaatcagctttaatgtggggtgctttggtacagcaaccaccact
ggcactatattcaattttggtaatagcctggctagcacaggcacattcggtggctttggg
acgactacaaccactgctgctgcaccagggtccacttttagctttgctgctccctccaac
acagcaggaggcctgtttggtaacacacagaacaaaggctttggattctcctctgggctc
ggcactgcaaccgcgcccgggacaacaggatttgggacgagtttaggaacatctggtctt
ggagggttcggaggctttaatatccagtcaactcagcagcagcaaggaggcttgtttggc
cagcagcagagtcaagctcagcccactcagctttaccagcaggtcaccgcactgtcagct
cctaccttgttgggagatgagcgtgactccatcttggccaaatggaaccagctgcaggct
tactggggcaccgggaagggctactacagcaacaacaacccacccgttgacttcacccag
gagaacccattctgcaggttcaaggcagtgggctatagctgtgtcccagtgagcaaggat
gaggatggtttagtggttttgattctcgttaggaaggaagctgatgtgcgagtgcagcag
cagcacctggtggagtctctccataaggtgctgggaaacaatcaaacactcactgtcaat
gtggatggtgtcaaagccctgccgaatgaccagaccgaggtggtcatttacgtggtggag
cgttcccttaatggcacctccaagcggatccccgccaccacactcttcgtttttttggag
cagggcaacgtcaaggtccagctctcacagattggagtggccatgtccctcacacgcaca
gagttgtctccagcacagctcaaacagctgctgcaaaatgctcctgcaggagtggaccct
atcatttgggagcaggccaaggtagacaaccccgacccagataagttgatcccagttcct
atggtgggttttaaggagctccttcgcagactgcagatccaggaccagatgaccaaacag
catcagaccagagtggatataatctccaatgacatcagtgaactgcagaagaaccaggcg
accacagtagcaaagatcgcccagtacaagaggaaactgatggacctctctcacagagtg
ctgcaggtgctgattaaacaggagattcagagaaaaagtggttacgctatccaggtggat
gaggagcatctcagggtgcagctggacacgattcagtctgaactcaatgcccccacacag
ttcaagggtcgtttgaatgaattaatgtcccagatccggatgcagaaccactttggagca
gtgaggtcggaggagcgctacagtgttgatgcagaccttctcagagaaatcaaacaacac
ttgaagcagcagcaggacggtttaagtcatttgatcagcgtcatcaaagacgacttggag
gacatcaaacttatcgagcacgggctgagcgacagtggacacttgagaggaggcatcctg
agctga
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