Hippoglossus hippoglossus (Atlantic halibut): 117771874
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Entry
117771874 CDS
T07778
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117771874 (chd1)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117771874 (chd1)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117771874 (chd1)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
117771874 (chd1)
SLIK complex
117771874 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
HDA2-3
DEAD
DUF1388
CHDCT2
Motif
Other DBs
NCBI-GeneID:
117771874
NCBI-ProteinID:
XP_034458604
LinkDB
All DBs
Position
12:1157200..1182833
Genome browser
AA seq
1811 aa
AA seq
DB search
MAGRSEEESVSNSSGESSNSDDESGSGSASGSGSGSSSSSSSSSSQSGSSDSGSGSDSGS
QSDSDTEKAKEKMEPPNKSNIDGAEFWKSNPSILAVQRSAMLRKQQLQHQQQQLQQRQSS
SNSGSDGDSSSDESDSSSGSKRKRNSGSSDSGSGSGSGSGSGSDSSAENKSEETASDYEP
SHKMKSRKPPTKMNFRNGKKSSSQKKKTKKGSSSEDEDDNYKKVASAGPRRQATVNISYK
EDEELKTDSDDVVEVVGEDVPQPEEDEFETLERVMDCRIGRKRAVGSVTTVYAIEADGDP
NSNFNPNKEAGDVQYLIKWKNWAHIHNTWETEETLKLQNVKGMKKLDNFKKKDQEKKKWL
KAASPEDIEYFNCQEELIDDLHSQYQIVERIIGHSNQKSVAGYPDYLCKWQGLPYSECSW
EDGALVSKKFQKCIDDYMSRNQSKSIPFRECKVLKQRPRFVALKKQPAYIGGDGLELRDY
QLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYMFNDHQLYGPFLLVVPLSTLVS
WQREIQLWAPQMNVVVYLGDISSRNMIRTHEWMHVQTKRLKLNILLTTYEILLKDKSFLG
GVNWAFIGVDEAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEK
FHSWEIFEEDHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQ
YYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNEFLNRAEALQHLI
RSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLRSKQFLFQRLDGSIKGEMRK
QALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQK
RQVNIYRLVTKSSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLNTGSAPSSSAPFNKEE
LSAILKFGAEELFKELEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANF
TMMDDEEMDIDSERSHRSWDDIIPEMQRRRMEEEERQKELEEIYLLPRMRNCAKQSSFNA
VEGRQSRNRRYSGSDSDSPSDRKRPKKRGRPRTIPRENIKGFNDAEIRRFVKSYKKFGGP
LERLDAIARDAELVDKSEHDLKRLAETVHNGCVRTLRENPCGPDKNSGGRRGKVKGPTFR
ISGVQVNAKLVISHEEELAPLHKAIPADPEERKKYMIPCHSKAAHFDIEWGKEDDSSLLI
GIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEAQ
KQAGTANSRKRKPRSKKSKTLKPTKIEEVMKSPSSDPPSDKRSDDEDEIKEEKEMAPVKP
LSRRGRADRVVVVKKEEDDDDDDGDDDDDDIDDGDDEEPEQEEVSSSGEMEVKEKEIKKE
GKKEKKEESWDIKETKEPKEKKDTKALDSVKQEETVEKNEVKLEARERTKKASDVPVHIT
ASGENVPISEESEELDQRTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKI
GDHITECLKEYSNPDLIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQN
TRSINTHGYKHADIERLKDNSHQDESSRDSYSSERHHATGRHHESSSSKERHSSESHRKT
AGGESRKRPYSSFSNGKDHRDRDHYRPDSRDRDRQDRYYNDNKHRKLEEFRSSSRDHRLD
MKDYSHSDQRSSYRYHSDWQTEQRASASGPRSPRDQRSPYDARSPMGHRSPLDYSSDHKS
TPEQIWSSRKT
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgcagtgaggaggaaagtgtaagcaacagcagtggagaatcaagtaattct
gatgatgagtctggatcggggtctgcatcagggtcgggctcaggctctagttccagctct
tccagcagtagcagccaatcaggaagcagtgactcaggaagtggctcagactccggcagc
cagtctgactctgacacagagaaagccaaggagaagatggaaccaccaaataagtcaaac
attgatggagctgagttctggaagtccaaccccagcattctagcggtgcagagatctgcc
atgctccggaaacagcagcttcagcatcagcagcaacagcttcagcagagacaaagctcc
tcgaatagtggatccgatggggactcatcaagtgatgaatcagattcatcaagtggatcc
aaaaggaaaagaaattcaggttcctctgactctggatcaggttctggatctgggagtggt
tctggatcagactcctcagcagagaacaagagtgaggaaacagcatcagactatgagccc
agtcacaaaatgaaaagcagaaaacctccaaccaagatgaattttcggaatgggaagaaa
agcagctctcagaagaagaaaacaaagaagggctcttcttctgaggatgaggatgataac
tacaagaaggtggcatctgcgggaccacggcggcaggccacagtcaacatcagctacaag
gaggatgaggaactgaagacagactcagacgatgtggtggaagttgtgggtgaagatgtc
ccacaacctgaggaagatgagtttgaaacgctggaaagagtgatggactgcaggatagga
aggaaaagagcagtaggaagtgtgaccactgtatacgctatagaagcagacggggacccc
aacagcaacttcaatcccaacaaagaggccggtgatgtccagtatttgataaagtggaag
aactgggcccatatccacaatacctgggagaccgaagagacactaaagttgcagaacgtc
aagggcatgaagaaactggacaattttaagaagaaggaccaggaaaaaaagaaatggtta
aaggcggcttcaccagaggatatagaatacttcaactgtcaggaagaattgattgatgac
ctgcactctcagtatcaaatagtggaacgaatcataggtcattcaaaccagaagtcagtg
gctggttacccagactacctgtgcaagtggcaggggttaccatactcggagtgtagttgg
gaagacggcgccctggtttccaagaagttccagaaatgcatcgatgactatatgagcaga
aaccagtccaagagcattccattcagagaatgcaaggtacttaaacagagacccaggttt
gtagccttaaagaagcagccagcttacataggaggtgatggactggagctccgagactac
cagctggacagtttaaactggatggcccactcctggtgcaaaggcaacagctgtatcctt
gcagatgagatgggtttagggaagaccatccagaccatcagcttcctcaactacatgttc
aatgatcaccaactgtatggacctttcctgctcgttgtgcctctctctacacttgtctcc
tggcagagagaaatccagctttgggcgcctcagatgaatgttgtggtgtacctgggagac
atcagcagcaggaacatgatcagaacacatgagtggatgcatgtccaaaccaagagactg
aaattgaacatccttctcacaacatatgagattcttctcaaagataagtcatttttgggc
ggtgttaactgggcattcattggtgtggatgaggcgcaccgactgaagaacgacgattcc
ctcctctataagaccatgatggacttcaagtccaatcacaggcttctgatcacgggaaca
ccgctgcagaactcgctgaaagagctctggtccctcctgcacttcattatgcctgagaag
tttcactcttgggagatatttgaggaggaccatggtaaaggtagggattcaggctacacc
agtctgcacaaagaactggagccttttctattgcgcagagtcaagaaggacgtggagaaa
tcccttccggccaaagtggagcagatcctccgagtggagatgagcgcaattcagaaacag
tattacaaatggatcctgaccaggaactacaaggctctgagtaaaggtaccaaaggcagc
acatcaggtttcctaaacatcatgatggagctcaagaagtgttgtaaccactgttacctg
atcaagcctccagaggacaacgagttcctcaatagagctgaagccttgcagcatctaatc
cgcagcagtggcaagctggttctgttggacaaacttctggtgcgtttgaaggagcgaggc
cacagagttctcattttctcccagatggtacggatgttggatatccttgcggactacctg
aggagcaaacagttcctctttcagagactagatggctccatcaaaggagagatgagaaag
caggcgttggaccactttaatgctgagggctcagaggacttctgcttcttgttatcaacg
cgtgcgggtggtctgggtataaacctggcatcggctgacacagtcgtcatctttgactca
gactggaaccctcagaatgatctgcaggcccaggccagagcccacagaatcggacagaaa
agacaggtgaatatctaccgtctggtgactaaaagctcagtggaggaggacatcattgag
agagcgaagaagaaaatggtgctggaccaccttgtcattcagaggatggatactacaggg
aaaaccgttctcaatactggttctgctccctccagttcagcacctttcaataaggaggag
ctttctgccatcctgaagtttggtgcggaggagcttttcaaagagctagagggagaagag
caggaaccccaggaaatggacattgatgagatcctcaaaagagctgagaccagggagaat
gaccctggaccctctacagtgggagaagagcttctgtctcagttcaaggtagccaacttc
accatgatggatgatgaggaaatggacattgactctgagcgtagtcaccggagttgggat
gacataattcctgagatgcagagaaggaggatggaggaagaggagagacagaaggagctg
gaagaaatctacttgctgccacgtatgaggaattgtgccaaacagtcaagctttaacgct
gttgagggccggcagagtaggaacaggagatactctgggtccgacagtgactccccctca
gaccgaaagaggccaaagaaaagagggcggcccaggaccatcccgcgggaaaatatcaag
ggtttcaatgatgctgagatcaggaggtttgtcaagagttacaaaaagtttgggggacca
ctggaaaggttggatgctattgctcgtgatgctgaacttgtagataagtctgaacatgac
ctgaaacgattggcagagactgttcacaatggctgtgtgagaacactgcgtgaaaatccc
tgtggaccagacaagaactcaggaggcagaagagggaaagtaaaaggcccaacattcagg
atctctggtgtccaggtgaatgccaagcttgttatctcccacgaggaagagctggctcca
ctccacaaggccattcctgctgacccagaggagagaaagaagtatatgattccatgccac
tcgaaggcagcgcactttgacatcgagtgggggaaggaggatgactccagcctgctcata
ggaatttatgagtatggttatggcagctgggagatgatcaagatggacccggacctcaat
ctcacacacaagctcctcccagacgaccctgacaagaagccacaggccaaacaactacag
acccgagcagactacctcatcaagttactgagcaaggacctggccaaaaaagaagcacag
aaacaagcagggacagccaattcacggaagaggaaaccaagaagcaaaaaaagtaaaact
ctgaaaccgacaaagatagaagaggtgatgaagagtccatcctcagatcccccgtcagac
aagagatcagatgatgaggatgaaattaaggaggaaaaggagatggcaccagtaaagcca
ctgagcagacggggccgagcagaccgggtggtggtggtgaagaaggaggaggatgacgac
gacgacgatggtgacgacgacgacgacgacatcgacgacggcgacgacgaggagcctgag
caggaggaggtttcttcatcaggggagatggaggtcaaagaaaaagagatcaaaaaagaa
ggcaaaaaggaaaagaaggaggaaagttgggacattaaagagacaaaggagccaaaagag
aaaaaggacacaaaggctctggactcagttaaacaagaggagactgttgaaaagaacgaa
gtaaaactggaagcccgagaacggacaaagaaagcctctgatgtgccagttcatataaca
gcaagtggagagaatgtgccaatatctgaggagtcagaggagctcgaccagaggaccttc
agtgtatgcaaggagaggatgcggccagtgaaagcagccctgaagcagctggacaggccg
gagaaagggctgtcggagcgcgagcagctcgaacatacgagacagtgcctcatcaagatc
ggggaccacatcactgagtgtctgaaggagtattcaaatcctgatctgatcaaacagtgg
agaaaaaacctgtggatatttgtttccaaattcactgagtttgatgcgaggaaactacat
aaactgtataagcatgcaatcaaaaaaagacaagaaaacgcccaggcaatggaacagaac
actagaagtataaacacgcacggctataaacatgcagatattgaaaggctgaaggacaac
tctcaccaggacgagagcagcagggacagctacagctctgaaaggcatcatgctacaggt
cgacaccacgagagcagcagcagcaaggagagacacagctcggagtcccacagaaagacc
gcaggaggggagtcgaggaaaaggccgtactcctccttcagcaatggcaaagaccacaga
gacagagaccactacagaccagacagcagagacagagacagacaggacagatactacaat
gacaataagcacaggaagctggaggagttccgcagcagcagcagagaccaccggctggac
atgaaggattattcccactccgaccagcgctcctcgtaccgctaccactcagactggcag
accgagcagcgggcctcagccagcgggccccgctctcctcgagaccagcgctcgccctac
gatgcgcgctcacccatggggcaccgctcacctttggactactcgtcagaccacaagagc
acacccgagcagatctggagcagccgcaagacataa
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integrated database retrieval system
