KEGG   Hippoglossus hippoglossus (Atlantic halibut): 117771928
Entry
117771928         CDS       T07778                                 
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like isoform X1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
hhip  Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03082  ATP-dependent chromatin remodeling
hhip03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:hhip00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    117771928
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    117771928
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:hhip01009]
    117771928
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hhip03021]
    117771928
   03036 Chromosome and associated proteins [BR:hhip03036]
    117771928
Protein phosphatases and associated proteins [BR:hhip01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     117771928
Transcription machinery [BR:hhip03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     117771928
    SWI/SNF complex
     117771928
Chromosome and associated proteins [BR:hhip03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    117771928
   PBAF complex
    117771928
   SWI/SNF complex
    117771928
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd
Other DBs
NCBI-GeneID: 117771928
NCBI-ProteinID: XP_034458734
LinkDB
Position
12:complement(339444..394141)
AA seq 368 aa
MQLALTKTFGQKPVKFQLEQDGDFYMVGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERK
KIVASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKAKRSSQWVPTLPN
SSHHLDAVPCSTTINRNRIGRDKKRTFPLCFDDHDPAVIHENAAQVEALVPIRLDMEIEG
QKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSVLEEQ
ADQRIIIKLNIHVGNISLVDQFEWDMSERENSPESFALKLCSELGLGGEFVTTIAYSIRG
QLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR
LANTAPSW
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgcaattggctctaacgaaaacatttggtcagaagccagttaagtttcaattggaacaa
gacggggacttttacatggttgggtcggaggttggaaactatttgcgtatgttcagaggc
tctttgtataaaagatacccatctttatggaggaggctggcctcagtggaggagaggaaa
aaaattgtagcatcatcacatgccactagtgtaactctactgaaggcatctgaatgtgaa
gagatctttgagggaaatgacgagaaatacaaggcagtgtccatcagcacggagccccca
gcttacctcagggagcagaaagcaaaaagaagcagtcagtgggtccccacattgcccaac
agctctcaccatctagatgctgtgccttgctccaccaccatcaaccgaaacagaattgga
cgtgacaagaagaggacctttcccctgtgttttgatgaccatgacccagcagttatccat
gagaatgcggcccaggtagaggctctggttccaattcgtctggacatggagatagaagga
cagaaactacgagatgccttcacgtggaacatgaatgagaaactgatgaccccagagatg
tttgcagagattttgtgtgatgacctagacctgaatcctctggcctttgtccctgccatt
gcctcagccattcgccagcagattgagtcctacccaactgacagcgtactagaggagcag
gcagaccagagaatcatcatcaagctgaacatccatgttgggaacatctctttagtggac
cagtttgagtgggacatgtcagagagggagaattccccagagtcgtttgcactgaaactg
tgctctgagctgggtttgggcggggagtttgtcaccactatcgcctacagcattcgaggt
caactcagctggcaccagaggacctatgccttcagtgagaatccactccccactgtggag
attgccatccgcaacacaggtgatgcagaccagtggtgccccctgctggagacactcaca
gatgctgaaatggagaagaagatccgagaccaagacaggaacacaaggcgtatgagaaga
ctggccaacactgctccatcctggtag

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