Hippoglossus hippoglossus (Atlantic halibut): 117771998
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Entry
117771998 CDS
T07778
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hhip03009
]
117771998 (ddx55)
Enzymes [BR:
hhip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117771998 (ddx55)
Ribosome biogenesis [BR:
hhip03009
]
Eukaryotic type
Pre-60S particles
Helicases
117771998 (ddx55)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
SBF_like
Helicase_C_2
YbjM
Motif
Other DBs
NCBI-GeneID:
117771998
NCBI-ProteinID:
XP_034458802
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All DBs
Position
12:2850117..2857851
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AA seq
599 aa
AA seq
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MDNTTDGTWDTLPVQLNEGILQTLQELKFTHMTPVQSACIPLFMGNKDVAAEAVTGSGKT
LAFVIPIIELLLKREEKLKKMQVGALVITPTRELALQISEVMQQFIEKFPQFTQILLIGG
SNPIDDVEKIQDQGANIVIATPGRLEDMFRRKEDGLDFGSSVRCLDVLVLDEADRLLEMG
FAASLNTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAAAAPAQKTP
SKLSNYYTLCRAEDKFNNLVAFLRQHKHEKNLVFFNTCAGVEYYGRLLETLIKKVIICCI
HGKMKSKRNKIFGDFRALKSGILVCTDVMARGIDIPDVSWVLQYDPPSSARAFVHRCGRT
ARIGNQGNALVFLLPMEETYVTFLSINQKCPLEIMPPVRDVVDVLPKVRAMSLADRAMFD
RSMRAFVSFIQAYAKHECSLIFRIKDLDFASLARGFALLRLPKMPELRGKTFPDFEATTV
DTETIRYKDKNREKERQKMLKDRAENPIPRKIFVKTTSWSKQKNKKDRKKKWTAKRKRKE
DCDIDDEDMKELLNDTRLLKKLKKGQISEEDFEKQITTLPKSKHKTEGVPLDDSVVEAV
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggacaacaccacagacggaacatgggacacgttacctgttcagctgaacgaggggatt
ctacaaactctgcaggagctgaagttcactcacatgacacctgtacagtccgcgtgtatc
ccgctgttcatgggcaacaaagatgtggctgcggaggcggtgactggaagtgggaagacg
cttgctttcgtcatcccgatcatcgagctgctcctgaagagagaggagaagctgaagaag
atgcaggttggcgccttagtgatcactcccacacgagaactggcccttcagatcagcgaa
gtgatgcagcagtttattgagaagtttccacagttcacgcagattttattgattggtgga
tccaacccaatagatgatgtggagaagatccaggatcaaggagccaacattgtgatcgcg
actcccggccgtctggaggatatgttcaggaggaaagaagatggtctggactttggcagc
tcagtcaggtgtctggatgtgctggttctggacgaggccgacaggctgctggaaatgggc
tttgcggccagtctgaacaccatcttgggctacctgcctaaacagaggcgcacaggcctg
ttttcagccactcagactcaggagctggagaagctggtgagggccggcctcaggaaccct
gtccgcatcaccgtcaaagagaaaggcgtggctgctgccgcccctgcccagaagaccccc
tccaagctctccaactactacacattatgtcgagctgaggacaagttcaacaacctggtg
gcttttctgagacaacacaagcacgagaagaatctggtcttcttcaacacgtgtgcgggt
gtggagtactatggccgacttctggagacgctgatcaagaaggtcatcatctgctgcatc
cacggcaagatgaagagcaaacgcaacaagatctttggagactttcgggccctgaagagt
gggatcttggtgtgcacagacgtcatggccagaggcatcgatatccccgatgttagctgg
gtgctgcagtatgatcctcccagcagtgccagggcctttgtccatcgatgtgggcgcaca
gcacgtattggtaaccagggcaacgctctggtctttttgctgccgatggaggaaacgtat
gttaccttcttgtccatcaaccagaaatgcccgctcgagataatgccccctgtacgtgat
gttgtggatgtgctgcccaaagtcagggccatgtccctggcagaccgcgccatgtttgac
agaagcatgagggccttcgtctcgttcatccaggcctacgccaaacacgagtgtagtctc
atctttagaatcaaagatttggactttgcttccttagctcgtggctttgccctccttcgc
ctgccgaagatgcctgaactaagaggaaaaacgttccctgatttcgaagccacgacagtg
gacacagaaaccatccgctacaaggacaagaacagggagaaggagagacagaagatgctg
aaagacagagctgagaatcctattcccagaaagattttcgtcaagactacgtcctggtcc
aaacaaaagaacaagaaggatcgcaagaaaaagtggacagccaaaaggaagcgcaaagag
gactgtgacattgacgatgaagatatgaaagagcttttaaacgacactcgcctcctcaag
aaactgaagaaagggcaaatcagcgaggaggactttgagaaacagataacaaccttacca
aagtccaaacacaaaaccgagggagtaccactcgacgactcagtggtggaggctgtttga
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