Hippoglossus hippoglossus (Atlantic halibut): 117772079
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Entry
117772079 CDS
T07778
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117772079 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117772079 (mtrex)
03041 Spliceosome [BR:
hhip03041
]
117772079 (mtrex)
03009 Ribosome biogenesis [BR:
hhip03009
]
117772079 (mtrex)
03016 Transfer RNA biogenesis [BR:
hhip03016
]
117772079 (mtrex)
Enzymes [BR:
hhip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117772079 (mtrex)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117772079 (mtrex)
Spliceosome [BR:
hhip03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117772079 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
117772079 (mtrex)
Ribosome biogenesis [BR:
hhip03009
]
Eukaryotic type
Pre-60S particles
Helicases
117772079 (mtrex)
Transfer RNA biogenesis [BR:
hhip03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117772079 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
117772079
NCBI-ProteinID:
XP_034458910
LinkDB
All DBs
Position
12:8012078..8033551
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTSSSKTPPVSAAPDPGKSGGKNGTDKDAGPTGRVKREADSDG
GEEVVFGKKPRNDAASANDLNLAEFMPQVKVEQVETVEGCSHEVALPVSDEYKPLKARVG
KAAKEYPFILDPFQREAILCIDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVGWVV
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHTQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGSGGGKWDPRRKG
GTRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEVFNN
AIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFA
MGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMADEKMSPS
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKIK
KLEEQYHGIDIPNEESVVTYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFCKKSNVKTISDSEPLYVVEVLVHCSKDSVKESATETAKPAAAGETGEMQ
VVPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIKD
PALKKVIQKVEAFEHRMYSHILHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVLQ
MDKLKCRKRVLRRLGFASPSDVIEIKGRVACEISSADELLLTEMVFNGLFNDLTVEQATA
LLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLDIDEETYMNQFKPHLM
DVIFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgcgtttggagacggcctgttcagcgtgtttgacgatgaacaacaaacgagt
tccagcaaaactccgcccgtctccgcggctccagatccagggaaatctggaggtaaaaat
ggcaccgacaaggatgctggacccaccggccgggtcaagagggaggcggacagtgacggt
ggcgaggaggtggtgttcgggaagaagcctcgaaacgatgcagcctctgctaatgaccta
aaccttgcagagtttatgccccaagtgaaggtggagcaagtggaaactgtggagggatgc
tcgcatgaggtggctctgcctgtcagtgatgaatataaaccactgaaagctcgagtgggg
aaagcagccaaggagtacccttttattcttgacccgttccagcgtgaggccatcctatgt
attgacaacaatgagtctgtgcttgtgtctgcacacacctccgctggcaagactgtctgt
gctgaatatgccatagctctggccctcagagagaagcagagagtgatcttcaccagcccc
atcaaggctctttccaaccagaagtacagggagatgtatgaggagtttcaggacgtggga
ctgatgactggtgacgtcaccatcaaccccacagcctcctgcctcgtcatgacaacagag
attctgaggagcatgttgtaccgaggctcagagatcatgagggaagtggggtgggtcgtc
tttgatgagatccattacatgagggatgcagagcgtggcgtggtgtgggaggagaccatc
atccttcttcctgacaatgtgcattatgtcttcttgtcggccaccatccccaatgccaga
caattcgctgagtggatttgtcacctacatacgcagccatgccatgtggtgtatacagac
tatcgtcccactccactgcaacactacatctttccagcagggggtgacggtctccacctg
gtggttgatgagaatggagacttcagagaggacaacttcaacacagctatgcaggtgctg
agggacgcaggggattctggaggcagcggcggaggcaaatgggacccgagacgaaaagga
ggcactagaggtccatccagtgttttcaagatagtgaagatgatcatggagaggaacttc
cagcccgtcatcattttcagcttcagcaagaaagagtgtgaggcgtacgctctgcaggtg
gccaaactggactttaatagagatgatgagaaacgtctggtggaggaagtgttcaacaac
gccatcgactgtctctccgacgaagacaagaaactgcctcaggtggagcatgtgctgcca
ctgttgaagaggggaataggtatccatcatggaggcctgctgcccatcctgaaagaaacc
atagagatccttttctccgaaggtctcatcaaggccctgtttgccacagagacgtttgcc
atgggcatcaacatgccagctcgcaccgtgctcttcaccagcgcacgcaagtttgatggc
aagaatcatcgctttatcacatcaggtgagtacatccagatgtctgggcgtgcagggagg
agaggaatggacgacaggggaattgttattttcatggcggatgagaagatgagtccgtct
gtgggcaaacagctactcaagggatcggcagacccattgaacagcgccttccacctgacc
tacaacatggtgctgaacctgctgcgtgtggaggagatcaacccagagtacatgctggag
aagtctttctaccagttccaacactacagggctttgcctggcgtggtggagaaaataaag
aagttggaggagcagtaccacggcattgatatccctaatgaggagagcgtggtcacttac
tttaaaatccgacagcagctcgcaaaactggggaaagagatccaagagttcacccacaaa
cctaaatactgcctccccttcctgcagcctggacgacttgtcaaggtgaaaaatgaagat
gctgactttggatggggagttgttgtaaacttttgcaagaagtctaacgtgaagaccatt
tcagactccgagccgctgtatgtggtggaggttttggttcactgcagcaaggacagtgtc
aaagaatctgccaccgagacggcaaaacctgctgctgcgggggagactggagagatgcag
gtggtcccagtgatgctgcatctcctgacttccatcagctccgttcgtctttacatcccc
aaagacctgaggccctttgacaacagacagctcatgctcaagtctattcaggaggtgcag
aagcgtttcccggacggcgttcctctgctcgaccccattgacgacatgggcattaaagac
cctgctctgaagaaagtcattcaaaaagtggaggcctttgagcaccgcatgtactcccac
atcctgcacagtgaccccaacctggaatctgtgtattctctctgtgagaagaaagcgctg
atcgcagcagatgttcgcacggccaagcgcgagctgaagaaagctcgcaccgtcctgcag
atggacaagctgaagtgcaggaagagagttctgcgacgcctcggcttcgccagcccctcc
gatgtgatcgagatcaaagggcgagttgcatgtgaaatcagcagtgctgacgagctgctg
ctgacggagatggtgttcaacggtctcttcaacgacctgacggtggagcaggccaccgcc
ctgctgtcctgcttcgtcttccaggagaacgccagcgagatgccaaagctgactgaacag
ttagctgcgcccctgagacagatgcaggagtgtgcgaagcggatcgccaaggtgtcggca
gatgctaagctggatatagacgaggagacttacatgaaccagttcaaacctcacctgatg
gatgtgatcttcgcgtgggccaatggcgccacgttcgctcaaatctgcaagatgacggac
gtctttgaagggagcatcatccgctgcatgcgtcgtctggaggaggtgctgagacagatg
tgctctgcagccaaggccattggcaacactgagctggagaacaagttcgctgaaggaata
actaagatcaagagggacatagtttttgctgccagcctctacctataa
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