Hippoglossus hippoglossus (Atlantic halibut): 117772146
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Entry
117772146 CDS
T07778
Symbol
thbs4b
Name
(RefSeq) thrombospondin-4-B
KO
K04659
thrombospondin 2/3/4/5
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04145
Phagosome
hhip04510
Focal adhesion
hhip04512
ECM-receptor interaction
hhip04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117772146 (thbs4b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117772146 (thbs4b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
117772146 (thbs4b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117772146 (thbs4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117772146 (thbs4b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hhip04147
]
117772146 (thbs4b)
00536 Glycosaminoglycan binding proteins [BR:
hhip00536
]
117772146 (thbs4b)
Membrane trafficking [BR:
hhip04131
]
Endocytosis
Phagocytosis
Opsonins
117772146 (thbs4b)
Exosome [BR:
hhip04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117772146 (thbs4b)
Exosomal proteins of colorectal cancer cells
117772146 (thbs4b)
Exosomal proteins of bladder cancer cells
117772146 (thbs4b)
Glycosaminoglycan binding proteins [BR:
hhip00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117772146 (thbs4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF
DUF7630
Motif
Other DBs
NCBI-GeneID:
117772146
NCBI-ProteinID:
XP_034458983
LinkDB
All DBs
Position
12:complement(7695786..7713455)
Genome browser
AA seq
940 aa
AA seq
DB search
MGLLTALVLASQLLLQLCSHVEAQALVYDLLTSPDCLPDLLQGGLAEQGVNEAFILATFK
LQPKTGTTVFGLYNPRDNSKYFEFTVMGKLNRAVLRYLRTDKRMSSVTFNNLVLADGQQH
RLLFHLKGMQQQGPGGLELHLDCRLVETIRDLPAAFQGLPAGYGTVELKTMQARDQESID
ELKLVVGDTFENVASLQDCHFQQRDSVQTLGVNTKQLSNQMLELTKVVSELKDVLIQQVK
ETSFLRNTISECQACGLGGTEVVKPRCAPGVCFRDDMCIETAEGVECGPCPDGYTGDGYN
CDDVNECQFNPCYPGVKCVNTAPGFRCDACPLGFTGLPVEGVGVLYAQTNKQVCDDVDEC
KGPNNGGCTANSICHNSVGSYQCGTCKTGFTGDQLKGCKPEVSCGNSLTNPCDVNAQCSV
ARDGSVSCLCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDSSCRKDNCMYIPNSGQEDADR
DSHGDACDDDADGDGIPNEQDNCWLKPNVDQRNSDKDSHGDACDNCRMMENPDQRDTDGD
GKGDTCDEDMDGDGLKNMLDNCQRLQNRDQRDRDGDGVGDACDSCPDIYNPNQSDIDNDL
VGDSCDTNQDSDGDGHQDTKDNCPFVINSSQLDTDKDGLGDECDDDDDNDGIPDMIPPGP
DNCRLVPNPDQTDDNNDGVGDICESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDP
EGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIF
GYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSRSGPGEHLRNSLWHTGDTN
DQVRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVTIDTTMRGGR
LGVFCFSQENIIWSNLKYRCNDTIPEDFQEFSTQHGTDSL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgggcttgttgacggccctggttctggcctcacagctgttgctccaactgtgctcacat
gtggaagcccaggctctagtctatgatctgctcacctcgcctgattgcctgccagacctg
ctgcaggggggtctggccgagcaaggtgtgaacgaggctttcatcctggccaccttcaag
ctgcaacccaagaccggaaccaccgtgttcggcctgtacaacccaagggacaacagcaag
tactttgagttcaccgtgatggggaagctcaacagagctgtgctacgctacctgcggacc
gacaaaaggatgagctcagtcaccttcaacaacctggtgctggcggacggccaacaacac
cgactgttgttccacctgaaggggatgcagcagcaggggccaggagggctggagctgcat
ctggactgcaggctggtggagacaatcagggatctccccgctgccttccagggtttgcca
gcaggctatggtacggtggagctaaagaccatgcaagcccgagaccaggagagcatagac
gagctcaagctggtggttggggacacttttgagaatgttgcttcattacaagactgccat
ttccaacaaagggactcggttcaaactctgggggtcaacacgaagcagctgtcaaatcaa
atgctggagctaaccaaggtggtaagtgagctgaaagacgtcctcattcagcaggtcaag
gagacctcatttctcagaaacaccatctcagagtgtcaggcctgcggcttgggtggaact
gaggtggtgaaaccaaggtgtgccccaggtgtctgtttccgtgacgatatgtgtatagag
acagcggaaggtgtggagtgcggaccctgtcctgatggttacaccggggacggttacaac
tgtgacgatgtgaacgagtgccagtttaacccctgctatcccggcgtgaagtgcgtcaac
accgccccgggcttccgctgcgacgcctgtccgctgggcttcactggcctgcctgtggag
ggtgtgggggttctgtacgctcagaccaacaaacaggtgtgtgatgacgttgatgaatgc
aaaggaccgaacaacggaggctgcaccgcaaactcaatctgtcacaactctgtgggctcc
taccagtgcggcacctgcaagacgggcttcaccggagaccagctgaaaggctgcaagccg
gaggtcagctgcggcaacagcctgaccaacccctgcgacgtcaacgcccagtgcagcgta
gcaagggacgggtcagtctcttgtctgtgtggaattggctgggcaggtaacgggtacctg
tgcgggaaggacactgacattgatggatacccagatgagaaactcaaatgcaaggattca
agctgcagaaaggataactgtatgtacattcctaactctggtcaagaagacgctgacagg
gacagccatggagacgcctgtgatgatgatgcagatggtgatggtattccaaatgaacag
gacaactgctggttgaagcccaacgtggaccagaggaacagcgataaggacagccacggt
gacgcatgtgacaactgtcgcatgatggagaaccccgaccagagggacacagacggcgac
ggcaaaggggacacctgcgatgaagacatggacggagatggcctgaaaaacatgctggac
aactgccagagactccagaacagagaccagcgggaccgagacggagacggagtgggagac
gcctgcgacagctgtcctgacatctacaacccaaaccagtctgatattgacaatgacctg
gtcggagactcctgcgacacaaaccaagacagtgatggcgacggtcaccaggataccaag
gataactgcccgttcgtgatcaatagctctcagctggacacggacaaagatggcctgggt
gacgagtgtgacgatgacgatgacaacgacggcatcccggacatgattccacccggaccg
gacaactgtcggctggtaccaaaccctgaccagaccgacgacaacaatgacggagttgga
gacatatgtgagtccgactttgaccaggacaaagtgatcgacaggattgacaactgcccc
gagaacgcagaggtcaccttgactgacttcagggcctatcagacagtggtgctggaccct
gagggtgacgcccagatcgatcccaactgggtcgttttaaaccagggaatggaaatagtt
cagaccatgaatagtgatccaggacttgctgttggttacactgcgttcagtggagtggac
tttgaggggacgttccatgtgaatacagtgactgacgatgactacgccggcttcatcttt
ggctaccaggattcatcctccttctacgtggtgatgtggaagcagaccgaacaaacctac
tggcaggcgacacctttcagagctgtagccgagcccggcatccaactcaaggcggtgaag
tctagatcgggccccggggagcacttaaggaactcgctgtggcacacgggagacacaaat
gaccaggtgcgtctgctgtggaaggacccgagaaatgtcggctggaaggacaaggtgtcc
taccgctggtacctgcagcaccgcccacaggttggatacatcagagctcggttttatgag
ggaactgagctggtcgctgactctggagtgacgatcgacacgaccatgagaggaggacga
cttggcgtgttctgcttctctcaagaaaacatcatctggtccaatctgaaataccgctgc
aatgacaccatccccgaggacttccaggagttcagcactcagcacggcactgactcactc
tga
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