Hippoglossus hippoglossus (Atlantic halibut): 117772422
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Entry
117772422 CDS
T07778
Name
(RefSeq) SR-related and CTD-associated factor 4-like isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117772422
03041 Spliceosome [BR:
hhip03041
]
117772422
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117772422
Spliceosome [BR:
hhip03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
117772422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Catalase-rel
Motif
Other DBs
NCBI-GeneID:
117772422
NCBI-ProteinID:
XP_034459427
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All DBs
Position
13:complement(5519080..5560266)
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AA seq
746 aa
AA seq
DB search
MDAVKAFNMELFSMIDLKPPISRAKMMSVTKSAIKAIKFYKHVVQIVEKFIKKCKPDLKV
PGLYVVDSIVRQSRHQFGVDKDVFAARFLKNFQDTFQNLYRCPEDDKSKILRVLNLWQKN
GVFDMDIIQPLMDMANEAIVAPPALKVSTDPQPEIQPPITLASALTAVPQLPTPDALAAV
AQLFQSPHGQELQRMLQNFQQADKTLGAAIANNVPDPVQMPVAQLNPYSAHTEKKSSLAE
KLLDRFDYDDEPEDITPKELSSQSQYTTEKVFNQFPGQMSNTENAYPHMMGQTDGIEHDG
GMSHGEYHMLSDGYHSIDEAYSQSRRNSREDPNMRREGRQRGFGRRSGSRSPRRRRSRST
SRSRRSRHRRSHSRSREQRVRSRSQDRNEREKDRERRQKGLPTIKGQTLSVCSTTLWVGQ
LDKKTQQSDVMSLLEEFGQIESINMIPPRGCAYIVMVHRQDANTALNKLSKGSYKVNQKP
VKIAWALNKGIKSAHKKFWDVERGVTYIPWSKAKVDELESYREGGMLDTETLNPEWTNAK
DLNMPVAVNGALESVPADGMVTAHIQAPAVQQVAPIRSPPAFPAPIMLSPTGMPPGGAPF
IPTEYDHKNLAPAGSVKPLEDSTIESKKDKGPPSDAGSDHQLGSPGAPVMNLPGPAVMQG
PRPGMPPLQPPPGMPPFLSPPNLPHMPPQMMFPPERFRMPMPFAPRGPPFLRHPSMGPEG
MDNREGGHFRNGRPGFGCPPFHRGRW
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagtgaaggcgttcaacatggagttgttctccatgatcgacttgaagcccccg
atatcccgagctaaaatgatgtctgtaacaaaatcagccatcaaagctatcaagttttac
aaacatgttgtccagattgttgagaagttcatcaagaagtgcaagcccgacttgaaagtt
cccggtctatatgtggttgattccattgttcgacagtcacggcatcagtttggggttgac
aaggatgtttttgcggccagattcttgaaaaacttccaagataccttccaaaatctttac
cgctgcccagaggatgataagagcaaaattctccgtgtcctgaacctgtggcagaagaac
ggtgtgttcgatatggacattattcagcctctgatggatatggctaatgaagccattgta
gctcctcctgcactgaaagtttccactgacccccaaccagagatccagcctcctatcact
cttgcctcagctttgaccgctgtgccccagctacccactcctgatgccttagctgctgtg
gcacagctgtttcagtccccccacgggcaggagctgcagaggatgctccagaacttccag
caggcagataagacccttggggccgccatagcaaacaacgtaccagaccctgtccaaatg
cctgtggcccagctcaacccgtacagtgcacacacagaaaagaagagctcattggctgag
aaactccttgatcgttttgactatgatgatgaacctgaggatataactcccaaagaactg
agttcccagtcccaatacacaactgaaaaggtgttcaaccagtttcctggtcagatgtcc
aacacagagaatgcttatccacatatgatgggacagaccgatgggatcgagcatgatgga
ggaatgagtcatggtgaatatcatatgttgtcagatggataccattccatagacgaggct
tattcccaatcaaggcgaaattcaagagaagacccgaatatgaggcgagagggtagacag
aggggcttcggcagaagatctggttccagatcccccaggagaagaagatcaagatctacg
tcccgctcaagaaggtcaaggcatagacgctctcattctcgctccagagaacagcgggtg
agatcacgttctcaagacaggaatgaaagagagaaggacagggagcgcaggcagaaaggt
cttcccaccataaaaggccagacactaagcgtttgtagcaccacactttgggttggacaa
ctagacaagaaaacgcagcagtctgacgtgatgtcccttttggaagagtttggtcagatt
gagtccatcaatatgattcccccgagaggttgtgcctatattgttatggttcacagacaa
gatgccaatacagctttgaacaagctcagtaaggggtcatacaaagtcaatcagaaacca
gttaagattgcttgggctttgaacaaaggtataaaatcagcacacaaaaagttctgggat
gtggagcggggggttacctacattccctggagcaaggccaaagtcgatgagttggagagc
tatcgagaagggggcatgctggacacagagacactaaatccagagtggactaatgccaag
gacctcaatatgccggtggctgtaaatggagcattggagagtgtgccagcagatggaatg
gtcactgctcacattcaggcgcctgcggttcaacaggtagcacccatccgaagtccacct
gcttttcctgcccccatcatgctgtcccctacaggcatgcctccaggaggagccccattc
atccccactgaatatgaccataaaaacctggcaccagcaggaagtgtaaaacctctggag
gactccaccatagaatcaaaaaaagacaaaggccctccgtcagatgcaggcagcgaccat
cagctgggctcgcccggggccccagtgatgaacctgcccggcccagcagtcatgcagggt
cccaggccgggcatgccgcctctgcagcctcctcccggcatgcccccgttcctctcgcct
ccaaacctgccgcacatgcccccgcagatgatgttcccacccgagcggttcagaatgccc
atgcccttcgctcctcgtgggcctcctttcctccgacatccctctatgggaccagagggc
atggacaaccgggaaggagggcacttcaggaacgggaggccaggattcgggtgcccacct
ttccacagagggaggtggtag
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