Hippoglossus hippoglossus (Atlantic halibut): 117772457
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Entry
117772457 CDS
T07778
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04136
Autophagy - other
hhip04140
Autophagy - animal
hhip04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117772457 (atg16l1)
04136 Autophagy - other
117772457 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117772457 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117772457 (atg16l1)
03029 Mitochondrial biogenesis [BR:
hhip03029
]
117772457 (atg16l1)
Membrane trafficking [BR:
hhip04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
117772457 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
117772457 (atg16l1)
Mitochondrial biogenesis [BR:
hhip03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
117772457 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_IFT122_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_EIPR1
eIF2A
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_SPT8
Beta-prop_DCAF12
V_ATPase_I
PUMA_CC
HEF_HK
HALZ
UPA_2
Motif
Other DBs
NCBI-GeneID:
117772457
NCBI-ProteinID:
XP_034459508
LinkDB
All DBs
Position
13:77284..91184
Genome browser
AA seq
608 aa
AA seq
DB search
MCQVVMAERLVELTWKRHISDQLKLRDRVQRHAFEEIIHHYHRLLEKSDLQAVLTERYQT
DKYDVQRESSAGTDSSRSDALQQEMALMRIKHQEELTELHKKRGELAQSVIELNNQIQQK
DKEIQSNEAKMLEFQQQIKDLEGDCRELRSFLQDLERANQTLKDEYDALQITFSALEEKL
RKTTEDNQELVSRWMAEKAQEANKLNAENEKDSRRRQAKLQKELADAAKEPLPIDPEDDI
EVLTEDGGKGGGETSPNRPLSRTPSKKMGQAPPAGLLDSISNIFGRRRPANSFSSPENPD
APSGVCAEVRVPSMALHVFEAHEGEVNAVRFSPGSRLLGTGGMDRRVKLWEVVAGRCECK
GALTGSNAGITSIEFDSTGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSARFLLD
NARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGHFDKKVRFWDIRAE
SIVQELELLGRVTSLDLNLDRTELLTCSRDDLIKIIDLRTNAVRQTFSAQGFKCGADWTR
VTFSPDGSYIAGGSADGALYVWNVLTGKVDRTLDRNHNSAINAVSWSPSGAYVVSVEKGS
KAILWSDM
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcaggtggtgatggcggagcggctggtggagttaacttggaagagacacatctca
gatcagctgaagctcagagaccgagtgcagagacatgccttcgaagaaatcatccaccac
tatcatcgtctgttggagaaatctgatcttcaggctgttttgactgagagataccagaca
gataaatatgacgtccagagagagtccagtgcgggaacggactcaagtcgtagtgatgct
ttgcagcaggaaatggctctgatgagaatcaaacatcaggaggaactgacggaactgcac
aagaagagaggagagttggcgcagagcgtgatcgaactgaacaaccagattcaacaaaaa
gacaaagagatccagagcaacgaggccaagatgttggaatttcagcagcagatcaaggac
ctggagggtgactgtcgggagctgagaagtttccttcaggacctggagagagcaaatcag
acgctgaaggacgaatatgacgccctgcagatcaccttctccgccctggaggagaaactg
agaaagaccacggaggacaaccaggagcttgtgtctcgctggatggcggagaaagctcag
gaggccaacaagctgaacgcagagaacgagaaggacagcagacgccgtcaggccaaattg
cagaaggagctggcagacgcagccaaagagccgctgcctatcgacccggaagacgatatt
gaggttctgactgaggatggtgggaaggggggaggagagacgtcaccaaacagaccgctc
agcagaacgcccagtaagaaaatgggtcaggcgccccctgctggtcttctggattccatt
tctaacatatttggcagacgtcgaccagctaactctttcagttcacctgagaaccctgac
gccccatcgggtgtgtgtgcggaggttcgagtcccatcaatggcactgcacgtgttcgaa
gcacatgagggcgaggtgaacgccgtccggttcagcccaggctctcgtctcctgggcaca
ggagggatggaccgcagggtcaagctgtgggaggttgtcgcaggtcgctgtgagtgtaaa
ggagctctaacaggaagtaacgcaggtatcaccagtattgagtttgacagcacgggttca
tacctgttggctgcttctaacgacttcgccagtcgcatctggacggtcgacgactacaga
ctgaggcataccttgacaggtcacagtgggaaggtgctgtcggctcgtttcctattggac
aacgctcgaatcgtgtctgggagctacgaccgaacactcaaactttgggacctccgcagc
aaagtctgtatgaagactgtgttcgctgggtccagctgtaacgacattgtgtgtacagag
cagtgtgtcatgagtggacacttcgataagaaagttcgattctgggacatcagggcggag
agtatcgtgcaggaactcgagcttttgggtcgagtaacatctctggacctgaacctcgac
cgaactgagctgctcacctgctccagagatgacctcatcaagatcatcgacctgcgcacc
aacgctgtccgacagacgttcagtgcacagggcttcaagtgtggcgcggactggaccaga
gtcaccttcagtcctgatggcagctatatagcaggagggtcagcggatggcgctctgtac
gtgtggaacgtcttgacggggaaagtggaccgaactctggaccggaaccacaactctgct
atcaacgccgtgtcgtggtcgccatcaggagcctacgtggtcagcgtggagaagggcagc
aaggccatcctgtggtctgacatgtga
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