Hippoglossus hippoglossus (Atlantic halibut): 117772534
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Entry
117772534 CDS
T07778
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117772534 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117772534 (patl1)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117772534 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
117772534 (patl1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
117772534
NCBI-ProteinID:
XP_034459677
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Position
1:complement(511645..554089)
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AA seq
884 aa
AA seq
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MLHSSHPAPRVTSLKKRTPLTSIVYSAATLFTPETPELFCGLKHFTHPSIGIIMSLDEDC
TLEEEDVGLAAEEDEIDQFNDDTFGAGAIDDDWQEEHKRLSNLDDRDGQGAGAGGGGRGM
ERESDLGGTDDSSSSHLSTYAGHHPLPSSLPSLNFSSSSSGLPPPDVEDRGGEGDLAESL
ARLILEADPAIAGVGATERPCPSLSSTASTLTTFHRLDQPRVLPQHSIPNPTHSHQPPQH
PQHQLPPGPSTSGIPLGPPSTSMLSYQQQQHMLRRGSAPIAQMNSHSIWENNMGFGPVSV
TPGLVTHMEDSPLMSIIKEVGLPKLPPRGRNDEGLDLSERVPPPRSSSPVIGSPPVRAVP
IGTPPKQPMSHSLNHQAHHPTAVHVRAPVQHRYPPPFPERLSPNTLLNLANSPLCRSPFP
PGVVPVLSQIQRAKLLNSQVAGFAHGGPPPPLLPGGGVFRPFFGGPPPPHGHRMGPLPPH
GPPNHTPPIRHNTTHLHPQHRRMLTQRMQSRGGDRGRTGGDRHSRDPYSNLMTQKEKEWV
TKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEYTTKLITPQVAKVEHTYRP
VQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEKMYSLLLE
VQDFEKRFVQAPEEDREALLEQHKTNTVQLCNSLREKEWDDRVSDEQCVMIMSVRKGKRL
ISRLLPFLPSPQATAIVMAIARNLPALAKKDKQDQVLCWLVEPLSAVIQSLSSSAITDLL
QELQGSEGQLATVLHNKFGVTLLYLILSEGEKMQSSDPNCQLMDDNRWTELVFAVTRELL
SVPSSSLSPPLVTPANLLSLFSRYVDRQRLELLQNKLQISSLSR
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgctccacagttcacatccagccccccgtgtcacaagtctgaagaagaggacaccattg
acttcaattgtatattctgctgccacgctgtttacccctgaaactccagaattgttttgt
ggactgaaacacttcacccacccctccatcggcattataatgtccctggatgaagactgt
acgctggaggaggaagatgtgggattggcagcagaggaagatgaaatcgaccagttcaat
gacgacaccttcggagctggggccatcgatgatgactggcaggaggaacacaaacgcctc
tcaaaccttgatgaccgggatgggcaaggagccggtgcaggaggaggaggaagagggatg
gagagagaatcagatttaggaggaacagatgactcatcctcttcccatctctctacctat
gcaggccatcatccccttccatcttctcttccatcactcaacttctcctcgtcttcctct
ggactgcctccaccagatgtagaggatcgaggaggggaaggtgacttggctgagtcactg
gccagactcatcctggaggcagacccagccatcgctggggtcggagccactgagaggccc
tgtccatccctgagctccacagcatccacccttaccactttccacaggttggatcaaccc
agagtccttccgcagcactccatcccaaatcccacccactcacatcagcctccacaacac
cctcagcaccagctgcctcctgggccctccacctcaggcatcccccttggtcctccttca
acatcaatgctcagctaccaacagcagcagcacatgctgcgcagagggtctgctccaatc
gcccagatgaactctcacagtatctgggagaacaatatggggttcgggccggtcagtgtc
accccaggacttgtcacgcacatggaggatagtccactaatgtctatcatcaaagaggtg
ggccttcctaaattacctcctcggggtaggaatgatgaaggactggatttgtcagagagg
gtaccaccacctcggtcttcttcccctgtgattggttcccctccggtgagggccgtgcct
attgggaccccgcccaaacagccaatgagccacagtctaaatcatcaggcgcatcatccc
acagcagttcatgtgagagccccggtccagcacagataccctcctccttttcctgagcgt
ctgtcacccaacaccctcctcaacttagctaactctccgctgtgtcgcagtcccttccct
cctggagttgttccagttctgtctcagattcaacgggccaagctgctcaactctcaagtg
gctggttttgcccatggcgggccacctcctcctttgttaccaggtggtggagttttcagg
ccattcttcgggggccctcctcctccacatggtcaccgaatgggcccactgccccctcat
ggtccccctaaccacacgccacccatccgccacaacaccacccacctccaccctcagcac
agacgcatgctcacccagcgcatgcagagccgaggaggggatcgtggcaggactggaggg
gaccggcacagcagggacccctacagtaatctgatgactcagaaggagaaagaatgggta
acaaagatccagatgatgcagctgcagagtactgacccttaccttgatgactactactat
cagaattactatgaaaagatggagaaacgtcaggaaagagagagagacagcagcaagaag
gaatacaccaccaaactcatcacaccacaggttgccaaggttgaacacacctacagacca
gttcagtttgcaggatctttgggtaaactgactgtctctagtgtcaacaacccccgcaag
atgattgatgctgtggtgaccactcgcacagacgacgaggagaaaagagagaagcaggtt
tggaataagaggcgacagatcctgtacactgtggagaagatgtacagtttgctgctggag
gttcaagactttgagaaacgttttgtccaggccccagaggaggacagggaggctctgctg
gagcagcataaaaccaacacagtgcagctgtgcaactctctgcgagagaaggagtgggat
gatagagtaagtgatgagcaatgtgtgatgatcatgtcagtgaggaagggcaagcggctc
atatccaggctcctccccttcctgccctcaccccaggccaccgccattgtcatggcgatt
gcacgcaaccttcctgccctggccaagaaggacaagcaggaccaggtgctttgctggtta
gtggagcccctttctgctgtgatccaatcactctccagctccgccatcacagacctgctc
caggagcttcaaggcagcgagggccaactggccacagtactgcacaacaagtttggtgtg
acacttctgtatctgatcctgagtgagggagagaagatgcaaagttcagaccccaactgt
caactcatggatgacaatcgatggactgagttggtatttgctgtgacaagggagctgctc
agtgttccctcctcgtccctctctcctcccctcgttacccctgccaacctgctctccctc
ttctcccgctatgtcgatcggcagaggctggagctgttacagaacaagttacagatctct
tcattgtccaggtag
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