Hippoglossus hippoglossus (Atlantic halibut): 117772815
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Entry
117772815 CDS
T07778
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04140
Autophagy - animal
hhip04148
Efferocytosis
hhip05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117772815 (vps16)
04148 Efferocytosis
117772815 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117772815 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117772815 (vps16)
Membrane trafficking [BR:
hhip04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117772815 (vps16)
Hops complex
117772815 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
117772815
NCBI-ProteinID:
XP_034460193
LinkDB
All DBs
Position
2:11272022..11279602
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AA seq
832 aa
AA seq
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MAFITANWNPLGEAFYRKSELYDMSWNIRDGLRDSLVAAAPYGGPIALLREPHRRSPSSR
PQLEIYSASGVAVASFPWKSGPVVQLGWSVTDELLCVQEDGSVLIYDLFGSFKRHFSMGQ
EVVQTQVLEAKVFHSPYGTGVAIVTGSSRFTLATNIDDLKLRRLPEVPGLQGKPSCWVVL
TQDRQTKVLLSIGPELFILDNTSCTAVCPPGLGPQGGSIVHMSVSFSYKYLALYTDTGHL
WTGPSHLQDKLSDIDTKKTTTPKQMVWCRRPKSQQPSVVLMWDRLLLVAGVCGDSIQFPV
EDPCVLVGELDGVRVISSSSQELLQEVPLVCQEIFKIASMAPGALLLEAHREYQKSSQKA
DEYLREIKEQSMLGEAVRQCVEAAGHEYDSNTQRSLLRAASFGKCFLTDFSPDHFVSTCR
ELRVLNAVRENAVGLPLTHTQFKQMTLQVLIDRLVYRQFYPLAIEICRYLKIPDYQGVSR
VLKHWASCKVQQKDLSDESIARAVCVKVGDSPGVSYSHIAAKAYECGRTELAIKLLDFEA
RSGEQVPLLLKMKRSQLALSKAVESGDTDLVYTVVTYLKNEMNRGDFFMTLRNQPVALSL
YRQFCKLQEQETLKDLYNQDDDHQELANYYVTSSYREKRLESRLSLLQSAVDEYNKAKND
FSSKATEEEMRLLRFQRKLDDEKGAGLLGLSLQGTMEALLSLGLHKQTEQLYRDFRVPDK
RYWWLKLKSLAEKEEWEELEKFSKSKKSPIGYLAFVDVCMKCNNKYEAKKYVSKVTPEQK
VKAHLAVSDLEGAADAAIERRNEAEMGAVLSRCSASDRLLIDRLNRAAAAKK
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcatcacagccaactggaacccgctgggagaagctttttatcgtaaatcagag
ctgtacgacatgagctggaacatacgtgatggactgagagacagtttggtggctgcagca
ccgtatggaggaccaatagctctcctcagagaacctcacagacgttctccaagttctcgt
cctcaactggaaatttattctgcatctggagtcgctgttgccagttttccttggaaaagt
ggacctgtggtccagttgggttggtcggtcactgacgagttgttgtgtgttcaagaagac
ggatcagttctgatctacgatctgttcggatccttcaagagacacttcagtatgggtcag
gaagtggtccagactcaggtgttggaggccaaagtgtttcactctccgtatggaacaggt
gttgccatagtaaccggctcgtctcgcttcaccttagccaccaacattgacgacctgaag
ctccgcagattacctgaagtcccaggtcttcaggggaagccatcttgttgggtcgtcctg
actcaggacagacagaccaaagttcttctgtccatcggacctgaactcttcatcctggac
aacacgtcctgtactgctgtgtgtcctccaggtctcggtccacaggggggcagcatcgtc
cacatgtctgtgtctttcagctataaatatctggctctctatactgacacgggacacctg
tggacaggcccctcccacctccaggacaaactgagtgacattgacaccaagaaaacgacg
actcccaaacagatggtgtggtgtcgcagaccaaagagtcagcagccgtctgtggtgctg
atgtgggacagactcctcctggtggctggagtctgcggtgacagcatccagttccctgtg
gaggatccgtgtgttctggttggagaacttgatggagttcgggttatcagctcctccagt
caggagcttcttcaggaggttcctctggtctgtcaggaaatcttcaagatcgcttccatg
gctcctggagctctgctgctggaggcgcaccgcgagtaccagaagtccagtcagaaggct
gatgagtacctgagggagatcaaagagcaaagcatgttgggagaagcagtcagacagtgt
gtggaggcggcaggtcatgagtacgactccaacacccagaggtctttgctgcgggcggca
tcctttgggaagtgtttcctgacggacttcagtccggatcattttgtgtcgacctgccga
gaactgcgagtcctgaacgccgtcagagagaacgccgtgggtctgccgctcacacacacc
cagtttaaacagatgactctgcaggtgctgatagacaggctggtgtatcgacagttttat
ccgttagcgatagaaatctgtcgttacctgaagattcctgattatcagggcgtcagtcgg
gtccttaaacactgggcgtcctgtaaggtgcagcagaaggacctatcagatgagtccatt
gcccgagcggtgtgtgtgaaggtgggagactcaccgggtgtttcttattctcacatcgca
gcgaaagcctacgagtgtggacgcactgagctcgcaatcaagctgttggactttgaggct
cgttctggagaacaggtccctctgctgttgaagatgaagaggagtcagttggctctgagc
aaagctgtggagagtggggacacggacctggtttacactgtcgtcacttacctgaagaat
gagatgaacagaggagatttcttcatgactctgaggaaccaaccagtcgccctcagcctc
tacagacagttctgtaaacttcaggaacaggaaactctgaaggatctttataatcaggac
gatgatcatcaggaactcgccaactactacgtgacatccagttatagagagaagaggtta
gagagccgtctgtctctcctgcagagcgctgtggacgaatacaacaaagcaaaaaacgat
ttttcatcaaaggccactgaggaggagatgcgtctccttcgttttcaacgaaaactggat
gacgagaagggggcgggtcttcttgggctgtcactccaggggaccatggaggctctgctg
tcgttaggtcttcacaaacaaacggaacaactctaccgagacttcagagtcccagacaag
aggtattggtggttgaaactgaagtctctagcggagaaggaagagtgggaggagttagag
aagttctcaaagagcaagaagtctcctattggctacctggcctttgtggacgtttgtatg
aagtgtaacaacaagtacgaagctaagaagtacgtttccaaggtaactcctgagcagaag
gtcaaagctcacctggcggtcagtgaccttgagggggcagcagacgctgccatcgagcgc
aggaacgaggcagagatgggggctgtcctttccagatgctccgcctctgaccggctgctg
attgacaggctgaaccgagctgcagctgccaagaagtga
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