Hippoglossus hippoglossus (Atlantic halibut): 117773008
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Entry
117773008 CDS
T07778
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03030
DNA replication
hhip03420
Nucleotide excision repair
hhip03430
Mismatch repair
hhip03440
Homologous recombination
hhip03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117773008 (rpa1)
03420 Nucleotide excision repair
117773008 (rpa1)
03430 Mismatch repair
117773008 (rpa1)
03440 Homologous recombination
117773008 (rpa1)
03460 Fanconi anemia pathway
117773008 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hhip03000
]
117773008 (rpa1)
03032 DNA replication proteins [BR:
hhip03032
]
117773008 (rpa1)
03400 DNA repair and recombination proteins [BR:
hhip03400
]
117773008 (rpa1)
Transcription factors [BR:
hhip03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117773008 (rpa1)
DNA replication proteins [BR:
hhip03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117773008 (rpa1)
DNA repair and recombination proteins [BR:
hhip03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117773008 (rpa1)
MMR (mismatch excision repair)
117773008 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
117773008 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
117773008
NCBI-ProteinID:
XP_034460567
LinkDB
All DBs
Position
13:7944015..7967805
Genome browser
AA seq
600 aa
AA seq
DB search
MAQLTEGAIETLSNGSGVNDAVLQLVNIRKIEGGSGPARFRVMMSDGLHTLSSFMLSTQL
NCMAEDNRLAPNCICILKRHVTNNLKDGRRVVIILEIEVIKSADEVDGKIGDPTPYTEGK
AKGQQSAPNTEPRPPLLQQNRNEAMNRGSNRDFGKKASAVPSTPGGSSKIVPIASLNPYQ
SKWTIRARVTNKGSIRTWSNSRGDGKLFSMELVDESGEIRVTGFNQEVDKFYSLAEVGKV
YYISKASLKIANKQYTSVKNDYEMTLNGESTIIPCEDSGDVPMVQCEFVSIGDLESREKD
AIIDVIGVCKKVDEVTRLTTKSNKEVSKRTLDLMDMSGKLVTVTLWGEEAEKFDGSGQPI
VAIKGAKVSDYGGRSLSASFSSTLMVNPDIPEAYKLRGWYDKEGHTMEGQSLTEAKGGGG
GGNTNWKTLSDVKTEHLGHGDKADYYTCIATIVYLRKENCLYQACSSQDCNKKVLDQQNG
MFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKDSNET
AFDEIFQQANFHTFVFRSRVKLETYNDESRIKATVMEVKPVDHKEYCKRLIVNIRKLAAQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagctcactgagggagccatcgagactctgtcaaatggctcaggagtcaacgac
gctgtgcttcagctggtgaacatccgcaagatcgaagggggaagtggtccagctcgcttt
cgggtgatgatgagtgatgggctgcacactctgtcctctttcatgctctccacccagctg
aactgcatggccgaggacaacagactggcccccaactgcatctgtatcctgaagaggcac
gtgaccaataatctaaaggatggacggcgcgtggtgatcattttggaaattgaagtcata
aagtctgctgatgaggttgatgggaaaataggagaccctactccatacacagagggtaag
gctaaaggccagcagtcggctccaaacaccgagccccgtcctccactgctgcaacaaaat
agaaatgaagcaatgaacagaggttccaatagagactttgggaagaaggcatctgctgtg
cccagcactccagggggcagctccaaaattgtacccatcgccagcctcaacccgtaccag
tccaagtggaccatccgtgcccgtgtaaccaacaagggcagcatccgaacatggagcaac
tctcgcggtgacggcaaactcttctccatggagctcgtggatgagagcggggagatacga
gtgactggtttcaaccaagaggtggacaagttctacagcctggctgaggtcggcaaggtc
tactacatctccaaggcctccctgaagatcgccaacaagcagtacacatctgtgaagaat
gattacgagatgacgctgaacggagagtccaccatcatcccctgcgaagacagcggcgac
gtgcccatggtgcagtgcgagtttgtttccatcggtgacctggagagcagagaaaaagat
gccatcatcgatgtgattggagtgtgcaaaaaagtggacgaggtgacccgcctcacgaca
aagtccaacaaagaggtgtccaagaggacgctcgatctgatggacatgtctggcaagctg
gtgactgtcactctgtggggagaggaagcagagaagtttgatggctctggacaacccatc
gtggccattaagggggcgaaggtctctgactacggaggccgctccctctcagcatccttc
agcagcaccctgatggtcaacccagacatccctgaggcgtataaactccgaggctggtac
gataaggagggccacaccatggaaggacagtctctgacggaggctaaaggtggcggcggg
ggtggaaacaccaactggaagaccctctctgacgttaagaccgagcacctgggacacgga
gacaaggcagactactacacctgcatagccaccattgtgtacctgcgcaaggaaaactgc
ctgtaccaggcctgctcgagccaagactgcaacaaaaaagtgttggaccagcagaatggc
atgttccgctgtgagaagtgtgacaaagagttccccaacttcaagtaccgcctcatcctg
tcggctaacattgcagattatggagacaaccagtgggtgacttgcttccaggagagtgca
gaggccatcctgggccagaacgcagcttacctggggcagctcaaggactcgaatgaaact
gcctttgatgaaatcttccaacaagccaacttccacacatttgtcttccgcagcagagtg
aagctagaaacatataacgatgaatccagaatcaaggccacggtgatggaggtgaagccc
gtcgaccataaggaatactgcaagaggttgatcgtgaacataaggaaactggctgcccag
tag
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