Hippoglossus hippoglossus (Atlantic halibut): 117773295
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Entry
117773295 CDS
T07778
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04137
Mitophagy - animal
hhip04140
Autophagy - animal
hhip04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117773295 (hif1al)
04137 Mitophagy - animal
117773295 (hif1al)
04148 Efferocytosis
117773295 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hhip03000
]
117773295 (hif1al)
Transcription factors [BR:
hhip03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117773295 (hif1al)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1
PAS
PAS_9
PAS_4
CENP-B_dimeris
Radial_spoke
DNA_pol_phi
Motif
Other DBs
NCBI-GeneID:
117773295
NCBI-ProteinID:
XP_034460976
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All DBs
Position
13:2293959..2308197
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AA seq
689 aa
AA seq
DB search
METKEERVTVKSMTSDLCPSGSKMEEGSTEQRKLRSRDAARCRRSQETEVFYDLARTLPL
PRKVSTHLDKAAIMRVALSFLRMHHLLRPGENQKEESEEEESDDREEDEEEEEEEDPIDA
FYPQTLAGFIMVMTEEGDMIYLTENVSKHIGITQLELLGQSVYDLVHPCDQEELRDLLGL
RPGSSKKEQKHHNERNFFLRMKSTLTSRGRTVNIKSATWKVLHCTGHMGPHGGGSTSPPA
ARVMTLLCEPIPHPSSVEFPLDTCTFLTRHSMDLRFTHCEGRVTDLVGYKPEDLIGRSAY
AFHHALDSDHVTKSLHTLLLKGQVSTSHYRFLANSGGFVWAETQATVLYSSKTSQPEAVV
CLNFILSSVEQPDVVFSSEQTRCGLQPKAEPDSPPLTPEDCGTPDICDTDVQNPTNCSQT
EDTGSNPSSTTELFFKPQEKPEQPFQTADDDTDAVAPLTGGFVELSFVSPLSPDLLPDHP
QDLCTPQLRQLLTPIFNPITPPSSPDPDVCPSEDDVMDASEVQRFFAIWPDNGQKKEKTV
ENMEGMDLDMLAPYISMDDDFQLSVSSGLSEEDDKPPSEPSAVTPPLSRKRAHNRDQELP
SQLRIQDKRQKQTPPTTEEELFLSHRLLDCLEEPDQSDLDLGPGGRSQLLTDRDPVLGGV
QGLCETAALMRDIFEPRPPDLPPPLSPLT
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggagacgaaggaggagcgcgtcacagtgaagagcatgacctctgacctctgtccctct
ggatccaagatggaggagggcagcacggagcaaaggaagctgcgctcccgtgatgcagcc
agatgtcgacgcagtcaggagaccgaggtgttttatgacctcgcccgcactctgccgctc
ccccgcaaggtgtccacccacctggacaaggctgccatcatgagggtcgccctcagcttc
ctgcgcatgcaccacctcctgcgacccggtgagaatcagaaagaggagtctgaagaggaa
gagagcgacgacagggaggaagacgaggaagaggaggaagaggaggatccaatcgacgct
ttctatcctcagacgttggctggtttcatcatggtgatgacggaggaaggggacatgatc
tacctgacggaaaacgtcagcaaacacatcggcatcacacagctggagctgctgggtcag
agtgtttatgacttagttcatccgtgtgaccaggaggagctcagggatctgctgggtcta
cgtccaggttcgagtaagaaagaacagaaacatcacaacgagagaaacttcttcctgcga
atgaaaagcacactgaccagcagggggcgcacagtcaacatcaagtctgcgacatggaag
gttcttcactgcacaggtcacatgggtccacatggtggcggctccacgtcgccccctgca
gccagagtgatgaccctgctgtgtgagcccatccctcacccgtccagcgtggagttccct
ctggacacgtgcaccttcctcacccgccacagcatggacctgcgcttcacacactgcgag
ggcagggttacagacttggtgggatacaaacctgaagatctgattggccgctcggcctac
gcgttccatcacgcgctcgactccgatcacgtgaccaaaagcctgcacacattgttgctc
aaaggtcaggtcagcaccagtcactaccgcttcctggcaaacagcggcggcttcgtctgg
gccgagactcaggcgactgttctctacagcagcaagacgtcgcagccagaggccgtcgtc
tgcctcaacttcatactcagttctgtggagcagcccgacgtcgtcttctcctctgagcag
acccgttgtggtctccagcccaaagcggaacccgactcaccgccgctcacaccagaggat
tgtgggacgcctgacatctgtgacactgacgttcaaaatccaaccaactgcagtcagact
gaggacacaggttcgaatcccagcagcactacagagctgttcttcaaaccgcaggagaag
ccggagcagccattccagacggctgatgacgacacagacgccgtcgcaccactgacggga
ggttttgtggagctgtcgttcgtcagtccgctcagcccggacctgctgcccgaccaccct
caggatctgtgcacgccacagctgcgacagctcctcacacccatcttcaaccccatcaca
ccaccctcgtcacctgaccctgatgtgtgtcccagtgaggacgacgtgatggacgcgagc
gaggtgcagaggttctttgccatttggccagacaatggtcaaaagaaagaaaagacagtg
gagaacatggaggggatggatctggacatgttggctccgtacatctcgatggacgacgac
ttccagctgagcgtctccagtggtttgtctgaggaagacgacaaacctccgtccgaacct
tcagctgtgactcctccactcagcaggaaacgggcccataaccgagaccaggagcttccg
tctcagctgaggattcaggacaagagacagaaacaaactcctccgacaacagaagaggaa
cttttcctcagtcacagattactggactgtctggaggaacccgaccaatcagatctagac
ctgggcccaggagggcggagtcagctgctcacagacagagaccccgttttaggaggcgtt
caggggctttgtgaaaccgcagctctgatgagggacatattcgaacctcgccctccggac
ctgccgccacctctgtcgcccttgacttga
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