Hippoglossus hippoglossus (Atlantic halibut): 117773401
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Entry
117773401 CDS
T07778
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117773401 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117773401 (scarf1)
Membrane trafficking [BR:
hhip04131
]
Endocytosis
Phagocytosis
Scavenger receptors
117773401 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_Teneurin
SPAR
Motif
Other DBs
NCBI-GeneID:
117773401
NCBI-ProteinID:
XP_034461198
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All DBs
Position
13:complement(18670036..18677832)
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AA seq
913 aa
AA seq
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MKFVLTALSVLLCCWSSSSHTLDPTGKNVCRSIRDPSALVCCTGWRQEGNECTIPVCEGE
QACLKDEICVYPGVCRCPPGYYGAHCKTRCPPEFWASDCRQVCRCHPHGRCNPVTGECTC
NPNRWGPLCQYPCKCTRHGHCHPSYGNCTCDEGWWTPTCSKPCQCVGSGSVGPGCDQLTG
RCQCLRGHWGLKCPVTCNCYLSLCNERTGVCECEAGWWGPSCDRRCNCDLTHSSCEPGNG
QCLCHPGYQGDYCNQPCESGKYGSGCKMSCGNCKDNQICSATDGACAACEPGWNGTQCDR
QCPSGLYGDGCQNKCPRCRNNEPCDPKTGDCWRCDPGWTGPRCEEACPDRTFGEACSFLC
SPCFHGNCSHVTGRCVCLPGFQGESCNSSCSAVQFGLNCSSVCDCGEGIPCHPVTGVCPN
SGRSAVLAGVLVPLLLLLLAVLCCCLCCGGGPVDSKDRAVVADGGLSVRMKYHVYSVLAN
ISAALPCISNWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTEGSSFDSDEEEGEALYC
VPPREDIPAVAGGEFQEMSSKCNMFLDPSGFSSEDITSPFNIPRTSSIAKSKRPSVSFAE
GTRFSPKERRGSAQDPGALLRTNKPKSTWGVLMLSALQSQGGAARTGDEDAAEGEEKEEE
EVDEQATDNQESSCEAGDQEVDRTSSRATSQVPSSAGRRRTMSNTAAHKGNLPQTSVCDA
QAGVLDKVTTVYVTVGKAGRPVSDTSSDGPVQAMLRRLGSLQRQKEQESGKSKSKGGEGI
TKPPRRKLGVRASVWEEGGPSGGEVAICKPIRRKHASHNSSDTVGLSEVSQSESGTPKRP
LSSILKSVPELAASDPGLRAEDEDSSSGKTESNYFTVGPAGDAASLTEVITNEGAVGSVS
DEPCYENVMINHL
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgtcctcacagcgctgagtgttctgctctgctgctggtcttcatcctcacac
acactggaccccactgggaagaacgtctgccgcagtatcagagacccctccgcccttgtc
tgttgcactggatggcgtcaagagggaaacgagtgcactatacctgtgtgtgagggtgag
caggcctgtctaaaggatgagatctgtgtgtatcctggagtgtgtcgctgcccacctggc
tactacggagctcactgcaaaacacgctgtcctcctgagttctgggcgtcagactgtcgc
caggtgtgtcggtgccacccacacggccgatgtaaccctgtcacaggtgagtgcacctgc
aaccccaaccgctggggtccgctgtgccagtacccctgcaagtgcacccgccatggccac
tgccaccccagctacgggaactgcacctgcgacgaaggctggtggacgccgacctgctcc
aaaccgtgccagtgcgtcggcagcggctctgtgggccccgggtgcgaccagctcacaggc
cgctgccagtgcctgagaggacactgggggcttaaatgccccgtcacctgcaactgctac
ctgtcgctgtgtaatgagaggactggtgtgtgtgagtgtgaggcaggctggtggggaccc
agctgtgaccggcgatgcaactgtgacctcacacacagcagctgtgagcctggtaacggg
cagtgcctgtgccacccggggtaccagggtgactactgtaaccagccctgtgaatctgga
aagtatggcagtgggtgtaaaatgagctgtggtaactgtaaagacaaccagatctgctct
gccactgacggggcctgcgccgcctgtgaacccggatggaacgggacacagtgcgaccgc
cagtgcccgtctggtttgtacggtgacggctgccagaataagtgtccacgttgcaggaac
aacgaaccatgtgacccaaagacaggggactgttggaggtgtgaccccggatggacagga
cccaggtgtgaggaggcctgccctgacaggacgttcggagaagcctgcagcttcctgtgc
agcccttgtttccatggtaactgcagtcacgtgacaggaagatgtgtctgtctgccaggc
tttcagggagagagctgtaacagcagctgctctgctgtgcagttcggcctcaactgctcc
tctgtgtgtgactgtggtgaggggatcccatgccacccagtcactggcgtctgccccaac
agtggcaggagtgctgtacttgcaggagtgttggtccctttgctcctgttgctgttagct
gtgctctgctgctgtttgtgttgtggaggaggccctgttgacagcaaagacagggcggtt
gtggctgacggaggtttgtctgttcggatgaaatatcacgtgtacagcgtcctggcaaac
atcagtgctgctctgccatgtatctctaactggtcctcaggtctgcctcgtgtcaccgta
tctcaccatgacccagagctgaccttcaaccacagcttcattgagcctccgtcctctggc
tgggtgactgaggggtcgtcctttgacagtgatgaggaggagggtgaagctctctactgt
gtccctccaagagaagacatcccagccgtggcaggcggcgagttccaggagatgagctca
aagtgtaacatgttcctggacccatcaggcttcagcagcgaggacatcacctcgcccttc
aacatccctcgcacctccagcatcgccaagtccaagcggccgtctgtctctttcgcagag
ggcacccgcttcagccccaaagagcgccgtggctccgctcaggaccctggcgctctcctt
cgcaccaacaaacccaaatccacctggggagttttgatgctctcggcccttcaaagccag
ggaggtgctgctagaactggggacgaggatgcagcagagggcgaggaaaaggaagaggag
gaagtggatgagcaggctacagacaaccaggagtcaagctgtgaggcaggggaccaggaa
gtagacagaacctcatcccgagccacctcgcaggtcccaagctcagcaggaagaagacgg
actatgtccaacacagctgcacataaagggaacctgccgcaaacatctgtctgtgatgct
caggccggggttttagataaagtcaccacagtgtacgtgacagtgggtaaagcagggaga
cccgtctcagatacgagctctgatggccctgttcaagccatgctgcgaagacttggcagc
cttcagagacaaaaagagcaggagtctggcaagtccaaatcaaagggaggtgaggggatc
accaaaccacccagacggaagcttggggttcgggcgagtgtgtgggaggagggagggccg
tctggaggggaggtcgccatttgtaaacctataaggcggaagcatgcttcccacaactcc
tctgacacagtgggccttagtgaagtttcacaatcagagagtggcacccctaaacgaccg
ctgtcatccattttgaagagcgtgccagagctggctgcatctgacccaggtctgagggct
gaggatgaggactccagttcaggaaagactgagagcaactactttactgtgggaccggca
ggagacgctgcaagtctcacagaggtcatcaccaacgaaggagcggtgggcagtgtgagt
gatgaaccctgctatgaaaatgtcatgattaaccacttgtga
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