Hippoglossus hippoglossus (Atlantic halibut): 117773402
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Entry
117773402 CDS
T07778
Symbol
vps53
Name
(RefSeq) vacuolar protein sorting-associated protein 53 homolog
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117773402 (vps53)
Membrane trafficking [BR:
hhip04131
]
Protein recycling
Others
EARP complex
117773402 (vps53)
Endosome - Golgi transport
Tethering complex
GARP complex
117773402 (vps53)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
COG4_N
GrpE
hAT-like_RNase-H
FBF1
Syndetin_C
COG5_N
Laminin_II
Sec8_N
PsaD
VPS51_Exo84_N
NBD94
Motif
Other DBs
NCBI-GeneID:
117773402
NCBI-ProteinID:
XP_034461199
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Position
13:18229045..18255378
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AA seq
825 aa
AA seq
DB search
MMEEEEFELAEDLESILHLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLAN
IDDVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQALEEAQIAIQQLFGKIKDIKDKAEK
SEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRKRQYGEVANLLQG
VVNVLEHFHKYMGIPQIRQLSERVKAAQSELGTQILADFEEAFPSQGSKRTGGPSNVLRD
ACLVANVLDPRIKQEIIKKFIRQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEE
KYGRMFPEEWCMTERIAVEFCHITRVELAKVMRTRAKEIEVKLLLFAIQRTTNFEGLLAK
RFTGCTLTDVPGKKRSESPLEPTNPFLEDEPGEDVDLAKPRKPKAPDNPFHGIVSKCFEP
HLYVYIESQDKNLGELIDRFVADFRAQGPPKVGTEEGGAVLPSCADLFVYYKKCMVQCSQ
LSTGEPMIALTTIFQKFLREYAWKILSGNLPKSSSSSGGLTISSLLKEKEFSDASKFTVD
ELCLICSILSTAEYCLATTQQLEEKLKEKVDKVLVERINLTGEMDTFSTVISNSIQLIVQ
DLDAACDPALTAMSKMPWQSVEHVGDQSPYVTSIIMHIKQNVPIIRDNLASTRKYFTQFC
IKFTNSFIPKFINHLFRCKPISMVGAEQLLLDTHSLKTVLLDLPSIGSQVLRKAPASYTK
IVVKGMTRAEMILKVVMAPHEPPVVFVDNYIKLLADGNPETFQKILDMKGLKRSEQSSML
ELFRQRLPTPPSGADGGPTLSFSAPTPEQESSRIRKLEKLIKKRL
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggaggaagaatttgagttggcggaggatttggagtcgattctgcatctcacc
ccggaggtgcagctcgccattgagcaggtttttcccagtcaggaccctctggacagagca
gacttcaatgctgtggagtacatcaacacactgttccccaccgagcagtccctggctaac
attgatgatgtggttaacaagattcgtctgaagattcggcgtctggacgacaacatccga
acggtggtgagaggacagaccaacgttggccaggatggcagacaggctttggaggaggcc
cagattgccatccaacaattgtttggcaaaatcaaagacatcaaggacaaggcagagaag
tctgaacaaatggttaaggagattacgagggacataaagcagttggaccatgccaagcgc
cacctgactacatccatcaccaccctcaaccacctgcacatgttggcggggggtgtggac
tctttagaagccatgaccagaaagaggcagtatggtgaagttgccaacttgctgcaggga
gtggtcaatgtgctggaacatttccacaagtacatgggcattccccagatcagacagctt
tctgagagagtgaaagcagctcagagtgagttggggactcagatcctggcagattttgaa
gaagccttcccctctcagggctccaagagaacaggtggtcccagtaatgtgctgagagac
gcctgcctggtggccaacgtgctggacccgcgcatcaaacaagagatcatcaaaaagttc
atcaggcagcacctctcagagtacctggtgctcttccaggaaaaccaagatgttgcttgg
ctggacaagatcgatcgccgctatgcctggatcaaacggcagctggtggactatgaggag
aaatacggacgcatgtttcctgaagaatggtgcatgactgagcggattgctgtggagttc
tgccacatcaccagggtggagctagccaaagtgatgcgaacacgagcaaaggagattgag
gtgaaactgcttctttttgccattcagagaaccaccaacttcgagggtttactggccaaa
cgcttcacaggatgcaccttgactgacgtacctggaaaaaagagatcagaaagccctctc
gaacctactaaccccttcctggaggacgagccaggtgaggatgtggatctagccaagccc
aggaagcccaaagctcctgacaaccctttccacggcattgtctccaagtgtttcgaacct
catctatatgtctacatagagtcccaggacaagaacctaggcgagctgatcgaccggttt
gtggccgacttccgagcacaaggcccacccaaggtgggcacggaggaaggcggagcggtc
ctgcccagctgtgctgacctctttgtctattacaagaagtgcatggtgcagtgctcacag
ctgagcaccggagaaccaatgatcgccctcacaactatcttccagaaattcctgagggag
tacgcctggaagatcctctctggaaaccttcctaagtccagcagtagcagtgggggtctc
actatcagcagtctgctgaaggagaaagaattctcagatgcttcaaagttcaccgtagat
gagctctgtctgatctgtagcatcctcagcactgcggagtactgtttggctaccacacaa
cagttggaagagaagctaaaggaaaaggtagataaagtcctggtggagagaattaatttg
actggagagatggatacattcagcactgtgatctcaaacagtattcagctaatagttcaa
gatctggacgctgcctgtgaccctgctctcactgctatgagcaagatgccgtggcagagt
gtggagcacgtgggtgaccagagtccttatgtgacgtcaatcatcatgcacattaaacaa
aatgtgccaatcatcagagacaatctggcctccactcgcaaatacttcacacagttctgc
atcaagttcacaaattctttcattcccaaattcatcaaccacctgtttagatgtaagcct
atcagcatggtgggagctgagcaactcctcctcgacacccactccctgaagaccgttttg
ttggatcttccctccataggctcccaggtgctccgcaaggcacccgccagctacaccaag
atagtggtgaaaggaatgaccagagcagagatgatactaaaggtggtgatggccccacat
gaaccaccagtggtgtttgttgacaactacatcaagctcctggctgatggcaacccagag
accttccagaagattctggacatgaagggtctgaagcgcagtgagcagagcagcatgctg
gagctgttcaggcagaggttacccactccgccctccggggctgacggaggccccactctg
tccttcagtgcccccacccctgagcaggagtcgtcccgcatccgtaaactggagaaactc
atcaagaagagactgtga
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