Hippoglossus hippoglossus (Atlantic halibut): 117775033
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Entry
117775033 CDS
T07778
Symbol
kcnma1a
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1a isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
117775033 (kcnma1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hhip04040
]
117775033 (kcnma1a)
Ion channels [BR:
hhip04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
117775033 (kcnma1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
117775033
NCBI-ProteinID:
XP_034463673
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All DBs
Position
15:complement(10081256..10219038)
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AA seq
1305 aa
AA seq
DB search
MLAEADGPVPHGSDSSMRTSNINSNILNRDSSILISKMVDVVIPFSSEVPCDNNGQRMWW
AFLASSMVTFFGGLFIILLWRTLKYMWTVCCHCNVKHKEAQKVINHQAADKGLKGTDEKE
EVPISEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALGIYFIDSSDPIESCQNF
YKDFTLQIDMAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWL
GLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWE
NFRNSQSLSYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIE
LIGNRKKYGGSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPN
LELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRV
ISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKAGFIAQSCLAQGLS
TMLANLFSMRSFIEIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPTICELCYVKLKLL
LIAIEYKSEQRESRSRKRILINPGNHVKMQEGTLGFFIASDAKEVKRAFFYCKACHDDIT
DPKRIKKCGCKRLIYSKMSVYKRMKLACCFDCGRSEQDCSCMSGSVHSNMDTLQRAYPLS
SVSVHDCATTLRASKYKYNGYVRSPADGATTPGNSGSQKEAGVRFKADCNLVEDEHPSTL
SPKKKQRNGGMRNSPNCSPKMMSRHDPLLIPGNEQIENMDMNVKRYDSTGMFHWCPSKEI
EKVILTRSEASMTVLSGHVVVCIFGDVTSALVGLRNLVMPLRASNFHYHELKPIVFVGSL
DYLRREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIEDASLQDKEC
ILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDSSPVHGFVRQASVTTGSNIPIIT
ELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTL
VTGGATPELEALLAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLF
CKALKTYNMLCFGIYRLRDAHISTPSQCTKRYVITNPPYEFELVPTDLIFCLMQFDHNAG
QSRTSLSHSSHSSHSSSKKSSSVHSIPASNRQNRSSKTRETRDKQNATRMNRMGQEKKWF
TDEPENAYPRNIQIKPMSTHMANQVNQYKSTSSLIPPIREVEDEC
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atgctagcggaggcagatggccccgtcccccatggaagcgacagctctatgaggacaagc
aatatcaatagtaatattctgaaccgggactcctcgatcctaatctccaagatggtagac
gttgtcatcccgttctcgtccgaggtgccctgcgacaataatggccagcgcatgtggtgg
gcattcctcgcgtcctccatggtgacgttcttcggggggctcttcatcatcctgctgtgg
aggaccctcaagtacatgtggactgtttgctgtcactgcaacgtcaaacacaaggaggct
cagaaggtgatcaaccatcaggcagcagacaagggtctaaagggcactgatgagaaggag
gaggtacctatcagcgaggtgggatggatgacttcggtcaaagactgggccggcgtcatg
atctcggctcagacgctcactggcagagtcctggtggtgttagtctttgcactcagcatt
ggggcccttggaatatactttatagactcttcagatcctatagaatcctgccagaacttc
tacaaagacttcacgttgcagatcgatatggcctttaacgtcttcttcctcctttacttt
ggcctgcggttcatagcagccaacgataagctgtggttctggctggaggtcaactccgtg
gtcgacttcttcactgttcctcctgtgtttgtctccgtctacttaaacagaagctggctc
ggtttacgattcttgagggcactgagattgatacagttctcggaaatcttacagtttctg
aatatcttgaaaacaagcaattccatcaagctggttaacctgtgctccatcttcatcagc
acatggctcacagctgcaggattcatacatttggtggaaaactcaggggatccttgggaa
aacttcagaaattcccagtcactttcctactgggaatgtgtctacttgctgatggtgacc
atgtcgacggtgggctacggggacgtctatgcaaaaaccaccttggggcgcctgttcatg
gtcttcttcatccttggtggtttggccatgtttgccagctacgtccctgaaatcatagag
ttaataggaaaccgcaagaaatatggtggttcctatagtgcggttaatgggagaaagcac
attgtggtctgtggtcatattaccctcgaaagtgtctccaacttcctcaaagacttccta
cacaaggacagggatgatgttaatgttgaaatagtttttctccataatatttcccctaat
cttgagctggaagccttgttcaaacgccattttacccaagtcgagttctaccagggatct
gttctcaaccctcacgatttggcccgtgtgaagatcgagtcagcagatgcctgtttgatc
ctggccaataaatactgcgcagatcctgatgcagaggacgcctcaaacatcatgagggtc
atttcaatcaagaactaccatcccaagatcagaataatcacgcagatgctccagtatcac
aacaaggcccatctgctgaacattccgagctggaactggaaggagggtgacgatgcaatc
tgcctggcggagctgaaggcaggcttcattgcccagagctgtctagctcagggcctctcc
acgatgttggccaacttgttctccatgaggtccttcattgagattgaggaggacacatgg
cagaagtattaccttgaaggagtggctaatgagatgtacacagagtatctgtccagtgcc
tttgtgggcctctcgttccccactatctgtgagctgtgttacgtgaagctgaagctgtta
ctcattgccatcgaatacaagtccgagcaaagagaaagcagaagccgaaagcgcatcctc
atcaacccggggaaccacgtcaagatgcaggagggaacacttgggttctttatcgccagt
gacgccaaagaagtgaagagagctttcttctactgcaaagcttgtcacgatgacatcaca
gaccctaagcggatcaagaagtgtggctgcaaacgactgatttattccaagatgtccgtc
tacaaacgaatgaaactggcatgttgttttgattgcggccgttcagagcaagactgctct
tgcatgtcaggcagtgtacatagtaacatggacacccttcagagggcctacccactttcc
tctgtctctgttcatgattgcgcaaccactttacgtgcctccaaatataagtataatgga
tatgtcagatcaccagcagatggcgctacaacaccagggaacagtggaagtcaaaaagag
gctggcgttcgattcaaagccgattgcaatttagttgaagacgagcatccgtcgacgctc
tcgcccaaaaaaaagcagcgcaacggagggatgcgaaactcgcccaactgctcgcccaag
atgatgagtcgacacgacccccttctgattcctggaaatgaacaaatcgagaacatggac
atgaacgtgaagaggtatgattcgacagggatgtttcactggtgcccgtctaaggagatc
gaaaaagtaatcctgacccggagtgaagcctccatgacggtgctgagcggccatgtagtg
gtctgtatatttggggatgtcacgtccgctttggtggggctgcgaaacttggtgatgcct
ttaagagccagcaacttccattaccacgagctgaagcccatagtgtttgtgggctcgctg
gattacctgcgcagagagtgggaaactttacacaacttccccaaggtctccatcttacct
ggtacaccattaagtcgggcggatttaagggctgtcaacatcaacctctgcgacatgtgt
gtaatcctgtcagccaatcagaacaatatcgaagacgcctcactgcaggataaggaatgc
atcttggcatcgctcaacatcaaatctatgcagtttgatgacagcatcggggtcttacag
gctaattcccaaggtttcacgcctcctggaatggaccggtcatctccagacagcagtcca
gtacatggcttcgtgcgtcaggcttccgtcaccaccggatccaacatccccatcatcaca
gaactagtgaacgactcaaacgttcagttcctggaccaagatgatgatgatgacccagac
acagagctgtacctcactcagcccttcgcctgcggcacagccttcgctgtcagtgtgctc
gactccctgatgagcgctacatatttcaatgacaacattctcacacttatccggacgctg
gtcacagggggagccacaccagagctggaggctctcttggctgaggagaacgctcttaga
ggcggctacagtacgccgcagacgctggccaacagagacaggtgtcgcgtcgcccaacta
gccctgtacgacgggccgttcgctgacttgggggatggtggttgctacggagacttattc
tgtaaagcactgaagacctacaacatgctgtgtttcggaatctacagattaagagatgca
catatcagtacaccaagccagtgtacaaaacgatatgtgatcacaaacccaccatacgag
tttgagctggtgcccacagacctgatcttctgcctcatgcagttcgaccacaatgcgggc
cagtcgcggacaagcctctcccactcttcccactcttcccattcctccagcaaaaagagc
tcctccgtccactccatcccagcgtccaaccggcagaaccgcagtagtaagacccgggag
acccgcgacaaacagaatgcaacaaggatgaatagaatgggccaagaaaagaaatggttt
acagatgaaccagaaaatgcctacccacggaacattcagatcaagcccatgagcactcac
atggccaaccaagtcaaccaatacaaatccaccagtagtctgattccaccaatcagagag
gtcgaagatgaatgctga
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