Hippoglossus hippoglossus (Atlantic halibut): 117775107
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Entry
117775107 CDS
T07778
Symbol
herc4
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117775107 (herc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hhip04121
]
117775107 (herc4)
Enzymes [BR:
hhip01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
117775107 (herc4)
Ubiquitin system [BR:
hhip04121
]
Ubiquitin ligases (E3)
HECT type E3
117775107 (herc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
117775107
NCBI-ProteinID:
XP_034463856
LinkDB
All DBs
Position
15:18319898..18332381
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AA seq
1044 aa
AA seq
DB search
MLCWGNASYGQLGLGGIDEEIVVEPRVCEFFHGKQVCDVGCGRRHAAFLLQDGTVYTCGC
NDLGQLGHEKSRKKPEQVVALDAQIIVAVSCGESHTLALNDKGQLFSWGLGSDGQLGLNN
LEECVRVPRNIKSLSDVQITQVACGYWHSHALSRGGQVFSWGQSRYGQLGLGLKGQSVST
PQIIQSLQGIPFAQISAGGAHSFALTLSGAVFGWGRNKFGQLGLNDTNDRCFPALLKSLR
SQRVIYISCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTNHEINPRKVFELMGSVVTQIS
CGRQHTLAFTPSSGKMDSFGLGGNGQLGTRSTCNRKSPAPVKSPWVAGALADSEKGCCVK
RIYAGGDQSFAHYCTANILQSRDAVRKQDHHGRICTLNGDIIHKWLNHSPGRLPLEISNE
IDLMFSSASCLNGSFLSMSHPDHFNTSSKYSGVDMNTARILFHRAIQQDHPEITQQIAAS
LEKHLIPRLSNSPPDIEALRLYLTLPECPLFNDRNNYVTIAIPFAKSLLSLKEAPLKVLG
NWWSRFEPRVFQRLVEVYKEVVVYLLQMHKVGIPSVEQRIFTCFLDTSLRFLEILHVVSE
RAGHIIQYDKFYIHELDDLIDIRNDYVTWIQRQMYPMGHDGVVTLCRYPFVFDAQAKTTL
LQTDAVIQMQIAVDQAQMQNFSSMFLPAVESVNPCLILVVRRENIVGDTMEVLGKSKNVD
YKKPLKVIFVGEEAVDAGGVRKEFFLLIMKELLDPKYGMFRYYEESRLIWFSNKTFEDID
LFNLIGVICGLAIYNLTIVELNFPVALYKKLLKRKPTLDDLKELMPDVGRSLQQLLDYTE
DDLEETFCLNFTITEDNYGATEVLELVPNGEDVNVNKSNRQDFVSAYVDYVFNTSVAPLF
ECFYAGFHKVCGGKVLELFQPNELQAMVIGNTNYDWTELEKTTEYKGEYWADHPTIRLFW
EVFHSLPLEKKKQFLLFLTGSDRIPILGMKNLKLVIQPTGGGEHYLPVAHTCFNLLDLPK
YMSLETLRKKLLQAIDHNQGFNLA
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctgggggaatgcctcctacggacagctgggcttgggggggatcgacgaggag
atcgtggtggagccgcgggtgtgcgagttcttccacgggaagcaagtgtgtgacgtgggg
tgtggccgcagacacgcagccttcctgctgcaggacgggacagtgtacacctgtggctgc
aatgacctgggccagctgggccacgagaagtccaggaagaaaccagaacaggtcgtggcc
ctggatgcacagatcatagtggcggtgtcgtgtggagagtctcacactctcgccctgaat
gataaaggtcagctcttttcatggggtctgggctcagatggtcagctgggcttaaataac
ctggaagaatgtgttcgtgtgcctcgaaacatcaagagtttgtcagatgtacaaatcact
caggtagcctgtgggtattggcactctcatgcactttcaagaggaggccaagtcttctcg
tggggccagagtcgatatggacaacttgggctaggattaaagggacagagcgtttccacg
ccacaaatcattcagtctctgcagggcattccttttgctcagatatcggccggtggtgct
cacagctttgccctcacgctctcaggagctgtgtttggttgggggcgcaacaagtttggt
cagctgggtctcaatgacactaatgatcgatgtttcccagctctgctcaagtctcttagg
tctcagagagtgatttacatctcctgtggagaagatcacacagcagcactgaccaaggag
ggaggtgtgtttacatttggagcgggcggatacggacaacttggacataactccacaaac
catgaaatcaaccctaggaaagtgtttgagctcatggggagtgtagttacgcagatctca
tgcggaaggcagcacacgttggctttcacaccctcctctgggaagatggactcattcggg
cttggcggtaacgggcaacttggtacacgctccacgtgtaacaggaaaagccccgcccct
gttaaaagcccctgggtagctggagcactggcagactcagagaagggctgttgtgtcaag
aggatttatgctggaggagatcagagctttgctcactactgcactgccaatatcttgcag
agcagagatgctgtgaggaaacaagatcaccacggacggatttgcaccttaaatggagat
atcatacacaaatggttgaaccattccccaggacgactcccgctggaaatctccaatgag
attgacctcatgttctcctcagcgagctgcctcaatggatcttttctgtcaatgagtcat
ccagatcacttcaataccagcagcaaatattcaggagtggatatgaacacagctcgcatc
ctgtttcacagagcgatccaacaagatcaccctgagataactcagcagattgctgccagt
ctagaaaagcacttaattcccagactgagcaactctcctccagacatcgaagccctgaga
ctctacctcactcttccagaatgccctctcttcaatgaccgaaacaattatgtgaccatt
gccatcccgtttgccaaatcgctcctcagcctgaaggaggctccacttaaggtgctagga
aactggtggtctaggtttgagcccagagtcttccagcggctggtcgaggtgtacaaggag
gtggtggtgtatctgcttcagatgcacaaggtgggcattccttcagtcgagcagagaatc
ttcacctgtttcctggacacgtccctccgattcctggagatcctgcatgtggtgagtgaa
cgggccggacacatcattcagtacgacaaattctacatccatgagctggacgacctgata
gacatcagaaacgactacgtcacatggattcagaggcagatgtatccaatgggccatgat
ggtgtggtgactctgtgcaggtatccctttgtgtttgatgcccaagccaagaccactctg
cttcaaactgatgctgtcatacagatgcagatagcagtggaccaggcacagatgcaaaat
ttcagctctatgttcctgccagcagtggaatctgtcaacccgtgcctcatcctcgtcgtc
cggagggaaaatatagtcggagacaccatggaagtcctcgggaagtccaagaatgttgac
tacaagaaaccactcaaggtgatctttgtaggagaagaggcggtcgatgcaggaggcgtg
aggaaggagttcttcctcttgatcatgaaagagctgctggatcccaaatacggcatgttt
cgttactacgaggagtccaggctcatctggttttcaaataagacctttgaagacattgac
ctgttcaacctcatcggggtcatctgtggtctggccatctacaatctcacgatagtggag
ctcaacttccccgtggccctttacaagaagcttctgaagaggaagccgacgcttgacgac
ctgaaagagctaatgccagatgtgggaaggagtctacaacagttactggactacacagaa
gatgacctcgaggaaacgttctgtttgaacttcacaatcactgaggacaactatggggcc
acagaggtgttggaactcgtaccgaatggcgaagacgtcaatgtaaataaatcaaacagg
caggactttgtcagcgcctatgttgactacgttttcaacacatccgtggcccctctgttt
gagtgcttctatgcaggctttcacaaagtgtgcggtggaaaagtcttagagctgttccag
ccaaacgaactacaagccatggtcattggcaacaccaactatgactggacggagctcgaa
aagactactgaatacaaaggggagtactgggcagaccatccgaccatcagactcttctgg
gaggtgttccacagtcttcctttagagaagaaaaaacagttcctcttgttcctcacagga
agtgaccgcatacccatcctgggcatgaaaaacctgaagctggtgatccagcccaccggt
ggaggggagcactatttacctgtggcccacacctgcttcaacctgctggacctgcccaag
tacatgagtctagaaacactccgaaagaagctcctgcaggctatagatcacaaccaaggc
tttaatcttgcctaa
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