Hippoglossus hippoglossus (Atlantic halibut): 117775688
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Entry
117775688 CDS
T07778
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117775688
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117775688
NCBI-ProteinID:
XP_034464931
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Position
15:complement(9179182..9204243)
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AA seq
1809 aa
AA seq
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MDELTGQMDYSGDLSGERVVTETITTTRRLTSLPPKGTGGSNHRNMSSSAGGLGLEKNVL
TQNSSGTYFSSSSVGVNTNSYSSSSGVYLGGDSSGGGDGGLGGFLDGDGYGSGGGGGGGG
GGGAGSGGGFLVGSVSKVRSSSSGGGRRAHAAGSSGGLSPGFRERTIISSRSGGYDGSSS
ANSSPEFTRKDYGNYCSSSARGRSESRESAIRARLQSASPTAGRWTELEDVKKLLKGRAN
SVSPTRSSTASTTLPVPKKASAEAKTVSVATQSVSSAYGSGVRSGAFNTIDASGLYNTSL
ASGQYDTGVKSGQYDATLLSSHYDTGVKSGQFDSAVKSGHYDVTLKSGQYDTGGKSVQYD
SLKSGQYDSGVKMSQYDTSVRSGQYGGSMRSGEYDMLDAVLPSFSWSTATLPSPTAMVVT
GNTSSNSYQVGTNNRSGGISPLGPTSPSSLSVYGFQNNLAPAISTVLTTNAANVSANVGG
YGVQKNVSTGSGFVSSGVSTVTRSQTDETNRSKFMVSDKENVSAKRDAEGFILAKDSGKQ
FTSSSSVHVGGGSLSGDSIKKEKFISSYGEAAPMKTEMSNYGSSGVVMKDKATYAEIHKD
SGIFGGGGFCCCSDACCSWWKWLLGLLLLSLLLLGLLFGLIALAEDVRKLKNRVSSLESS
VFSGRTSKLSGSSNSINTLALGAGGGDSNTDGTVHLGAGGGGSGTRTRIGIATGAAGTGG
EGVNDISINGGGYGGAGSAGGASTGGASAGSATSGARAGSGSGSVSGAGVAGGASGGSAG
GSGTSSSGSSSSTGTSFSGSSGSTGTSFSGGLGTGVSGGHIDGASLQLMIQQMLRAEMQS
QTFRAFLASSGQGERGLPGPKGDSGYPGTPGPPGALGHAGPEGPKGQKGISGDHGLEGPP
GLRGREGQAGPRGEAGPPGFGTKGDKGAPGDSGVGTAGPKGASGSPGEPGAQGFRGEAGP
PGPKGDRGLAGFQGLKGETGEKGVRGMQGDPGLSGMHGPAGEKGSKGSMGQSGQDGAKGS
RGDQGPAGPPGLRGLAGPPGDAGLPGVPGLQGPPGIPGNPGQPGTKGETGQPGRIINAAG
SASIGIPGPPGPSGPPGPAGSPGLSGPIGPAGLPGQSGPKGDRGYKGDQGEQGSTVRRTE
TISSTRADSQFGESGASRSSSLPGPPGPPGPPGRAGDSRQGPPGPPGPPGPTGYGRQGPK
GDRGDSGHSSSSGTYYTGPPGPPGHPGPKGSSGSQGPRGFQGEQGQQGVAGTPGRPGSSV
STYAGGSGISGPPGPPGPPGHPGQQGFKGDTGAPGIPGSSRGSISVTSGPPGPPGPPGPQ
GQTGSFSSSTEMRQYITDYLSRSRQSSIPGPPGPPGPPGIPGTFSGSMDDISARIIAYIQ
RSGSGLSIGVQGPPGPPGPPGSGSRVLSVGDLIIMLQRNEVRRYLSGPPGPQGPPGPPGA
SGASGGLSGSYSAEQVAMYVFNIMNDRGIARGPPGPPGLPGPAGPSSGGSSGFNTLTVDY
SALMKNSEFRSWISSAVQQGPPGPPGVQGRSGPPGPQGPSGVSTATVFGAGGHGYSMEDI
QRYLQGSGFRGLPGSPGPPGPQGPPGSHSGSVSYTGNFPRESIRAEVQEYLTSDNVRRFI
TGTPGATGPPGPRGPQGERGEQGYSQSYVQSQSYAQGDSRFRTDQTLDYSNVAVRVTDYI
RSQGLLKEYLVEGPSRTNVRAIQGPPGPPGPAGPPGYSRVIGSYGNVTADLMEFFRAHGT
IPGPPGSIGQQGDRGYPGPKGEKGDPGQPGLAGLPGSYTIQVPHKVQKRDTVNKVRRRRQ
LRPRLSKSG
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacgggacagatggactactcaggagacttgtcaggagaaagggttgtg
acagaaactataaccaccactaggagactgacttccctccctccaaagggaaccggcgga
tcaaatcacaggaatatgtccagcagtgctggtgggctgggcttggagaagaatgtctta
acccagaacagcagtggaacttatttctcctcatcctctgtaggtgtgaacaccaacagc
tacagctcctcctcaggagtttacctggggggagactcctcagggggaggcgatggagga
ctggggggtttcttggatggagatgggtacggaagcggaggaggaggaggaggaggagga
ggaggaggagcaggaagcgggggaggcttcctcgtgggctcggtgtcaaaggtcaggtcc
agctcgtctgggggtggcaggagagcgcatgccgctggctcatcaggaggcctgtcgcca
ggtttccgagagaggacgatcataagcagccgctcgggaggttatgacggaagttccagt
gcaaattcctccccagaatttactcgtaaagactatgggaactactgctccagcagtgca
agagggaggagcgaaagcagagagagcgcgatcagagccagattacaaagtgcctctccc
accgccggcagatggacggaactggaggacgtgaagaagctgctgaagggacgcgccaac
agcgtcagccccactcgctcgtcaactgcctccaccactctgcctgtccctaaaaaggcc
agcgcggaagccaagaccgtctctgtggccacgcagtcggtgagctctgcatatggctct
ggtgtgagatccggtgcattcaacaccattgatgcttcaggcctgtataatacaagtctg
gcatctgggcagtatgatactggtgtaaaatcgggccagtacgatgccactctgttatca
agccattatgacaccggtgtgaaatcaggacagtttgattctgctgtaaaatcaggccat
tatgatgtcactctgaaatcaggacagtacgacactggtgggaaatcagtccagtatgat
tccctgaaatcaggacagtatgatagtggtgtaaaaatgagccagtacgacaccagtgtg
aggtcaggtcagtacggcggcagcatgagatcaggtgaatatgacatgctggacgctgta
cttccatctttctcctggtccaccgccacactcccctcccccaccgccatggtggtcact
ggcaacaccagcagcaactcgtaccaggtcggcaccaacaacaggtctggaggaatctcg
ccgctcggccccacctcgccctcgtccctgtcagtttacggctttcagaacaatctggca
cccgccatcagcaccgtgctcaccaccaacgcagccaacgtcagcgctaacgttggaggt
tatggcgttcagaagaatgtgtcaactgggagcggattcgtcagctctggagtctctaca
gtcactcgatcccaaactgatgaaacgaataggagcaagttcatggtctctgataaagag
aacgtttcagccaagagggacgcagaggggttcattctggctaaagacagcgggaagcag
ttcaccagcagcagcagcgttcatgtcggaggagggtcactatcgggagattcaataaag
aaagagaagtttatttccagctacggtgaggcggctccaatgaagactgagatgtccaac
tatggatcctctggagttgtaatgaaagacaaagccacctatgcagagatccacaaggac
agcggcatcttcggcggtggtggattctgctgctgctccgacgcttgctgctcctggtgg
aaatggctgctgggccttctcctcctctccctcctcctgctgggacttctcttcggcctc
atcgcgctggctgaggacgtgaggaagctgaagaatcgagtgtcttccctggagtcgtct
gtcttctcaggacgtaccagtaagctgtcaggctcttccaattccatcaacaccttagcg
ctcggtgcaggcggaggtgacagtaacactgacggcacagtacacctgggcgctggaggt
ggaggctcaggcaccagaacacgaattggaattgccactggtgctgccggcactggaggt
gaaggtgtcaatgatatcagtatcaacgggggaggctatggtggtgccggaagtgccggt
ggggccagtactggtggggccagtgccggcagtgctaccagtggtgcccgtgctggcagt
ggtagcggtagtgtcagtggtgctggtgttgctggtggggccagtggtggaagtgctgga
ggtagcggcaccagctccagtggcagctccagcagcacaggcaccagcttcagtggcagc
tccggcagcacaggcaccagcttcagtggtgggcttggtactggtgtgagtggaggacac
attgacggtgcctctcttcagctgatgatccagcagatgctcagagctgaaatgcaatca
cagacattcagagcttttctggcatcttcagggcagggagagcgagggcttcctggacct
aaaggtgattctggttaccctggaactccaggtcctccaggtgcgttgggacacgcaggc
cctgagggtcctaaaggacagaaaggaatctcaggtgaccacggactggaggggccaccg
ggtctcaggggtcgtgagggccaagctggccccagaggtgaggcgggacctccaggcttt
ggaacgaaaggtgacaaaggggctcctggagattctggggttgggactgctggaccaaaa
ggtgcatccggatcaccaggtgaacctggtgctcagggtttccgtggcgaggctggacca
ccgggtcctaaaggtgacagagggctcgctggatttcaaggacttaaaggtgaaactggt
gagaaaggtgtcagaggcatgcaaggtgaccccggtttatcaggaatgcacggaccagct
ggagagaaaggatccaaagggtcaatgggtcagtctggacaagatggtgcaaaaggatca
agaggtgaccaaggacctgccggcccccctggactcaggggtcttgctgggcctcccgga
gacgctggacttccaggagtacctgggcttcaaggaccaccagggataccaggaaaccca
ggacaacctggaaccaaaggtgaaactggtcaaccaggcagaatcatcaatgcagctggt
tccgcttctatcggcatcccaggaccacctgggccttctggtccccccggccctgcagga
tctcctggattatcaggtccaattggccctgctggtctgcctggccagtctggtcctaaa
ggtgacagaggatataagggagaccagggagaacaaggatcaactgtgagaaggaccgaa
actataagttcaaccagagctgacagtcagtttggagaaagtggagcctcaagatcttct
agcctaccagggccaccaggtcctcctgggccacctggacgtgcaggagattcgagacaa
ggacctccgggaccacctgggcctccgggtccgacaggttatggaagacaaggacctaaa
ggagacagaggagactcaggccattcgtccagctctgggacatattacactgggccacca
ggaccacctgggcatcctggacctaaaggatcatcaggttctcaaggaccaaggggcttt
caaggtgaacaaggacagcaaggtgtggccggtactccaggaagaccaggaagctccgtg
tcgacttatgctggaggaagtgggatctctggaccaccaggtccaccagggcctcctgga
catccaggacagcaaggattcaaaggtgacactggagctcctggaattccgggttcttca
agaggctccatctcagtcacttcaggccctcctggtcctccaggtcctcctggtcctcaa
ggccagacgggctccttctcctcttctactgagatgcgccagtacatcactgactatctg
agtagaagccggcagtccagtatccctggacctccaggtccacctgggcctccaggaatc
cctggaaccttctctggctcaatggacgacatctcagctcgtattattgcatacattcaa
aggtctggctctggcctcagcatcggagttcagggtcctccaggaccacctggtcctcct
ggatctggctctcgagtcttatcggttggtgatctcattatcatgcttcagaggaacgaa
gtgaggagatatttgtcaggaccaccaggaccacagggaccaccaggaccaccaggggca
tcaggggcgtcaggtggactttcaggcagttacagtgctgagcaggtcgccatgtacgtc
ttcaacatcatgaacgacagagggattgctcgaggtccacctgggccacctggcttacct
ggacctgctgggccttctagtggaggatcatctggctttaataccttgacagtcgactat
tctgcactgatgaaaaactcagagttccgctcatggatcagctctgccgtacaacaaggt
cctcctggacctccaggtgtccaagggcgatctggccctcccggccctcaggggccctca
ggagtctccaccgccaccgtgtttggggcgggaggtcatggctacagcatggaggacatt
cagcgctacctgcagggttctgggttcagaggtcttcctggttctcctggcccacctggt
ccacagggtccaccaggcagtcactctggctcggtttcctacactggaaacttccctcgg
gagagcatccgcgctgaagttcaggagtatctgacctctgacaatgttcgtcgtttcatc
accggaactccgggggccacaggacctccaggtccaaggggacctcaaggagaacgcgga
gagcagggttacagccaaagctacgtgcagagccagagctacgctcagggtgacagccgc
ttccgcactgaccagacactggactactccaacgttgctgtgagagttactgactacatc
aggagtcaaggcctgttgaaggagtacctggtcgagggcccgtccaggacgaacgtgaga
gcgattcaaggccctccgggtccacctggccccgccggaccacctggttacagccgcgtc
atcgggtcctacggtaacgtcacagctgacctcatggaattcttcagagcccacggcacc
atccccggtcctccaggaagcattggacaacagggagacagaggatacccaggacccaaa
ggagagaagggtgatcctggacagccaggtctagcaggattaccagggtcgtacacgatc
caggttccacacaaagtgcagaagagggacacagtcaataaagtgcggcgtcgtcgccag
ctgcgtcctcgtctgtcaaagagtggctga
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