Hippoglossus hippoglossus (Atlantic halibut): 117775888
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Entry
117775888 CDS
T07778
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117775888 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117775888 (vps8)
Membrane trafficking [BR:
hhip04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117775888 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_Vps41
Clathrin
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
TPR_VPS8_2
zf-RING_UBOX
zf-RING_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_5
zf-RING_2
Beta-prop_WDR5
ANAPC4_WD40
Beta-prop_EML_2
zf-C3H2C3
zf-rbx1
zf-C3HC4
WDR55
Beta-prop_HPS5
Beta-prop_WDR3_1st
EIF3I
PHD_4
Motif
Other DBs
NCBI-GeneID:
117775888
NCBI-ProteinID:
XP_034465327
LinkDB
All DBs
Position
15:complement(24523095..24573580)
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AA seq
1404 aa
AA seq
DB search
MSESPDARSLLSASSQLNLMEVDTIDDKEFDIPQVDTPPTLESILNELDDEEEPFMLEDT
CTLSTDNMDAHSCDTSSLASSDSGDPAHLKRKRRTVDLNATVHGSVLRHSLLKGISAQIV
SAADKVDAGLPTAITVSGVIAVGTSHGLALVFGKDTNQALRLCLGTKTTGAEFGAVSALS
INHDCSRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHIKFTDDPTLAVCNDSGG
SVFELAFRRVMGMRTCDSRCLFSGSKGEVCCIEPLRAPPDFRDHPITHYSLLAMASLTKI
LVIGLKPTLKVWMTFPYSKSDPSSVPQLAWQFVPVQKTVNPILAFCKGDTVHFLLVKKEE
TGTIHVIKQRQLHLSCDIISLSWINSRTLVLVDSHEKLHVVDRPSQEVLETLDLEQVQLV
YNSRHFKSLATGGNVSQALALVGEKACYQSVSSYAGQIVYLGTKSAHIMTLRNWRERLDC
LLKQEHFAEALTLAWSFHEGTAKAVVGLFGDPIKRKGVVADKMAEILCQFADHALKKCPE
QGKIQVMEQHFYDVVPVLVDYCLLLQRADLLFSHLYARLVENTVSKGVFLESLESYIVAD
RLGHLTTPIMRDLLAHYHGNGMMDSLERCIVHLDVTSLDIQQVVQVCWENQLYDAMIYVF
NSGMNDYITPMEKLFAVIGPPLREGRSLTDEEVVMGNKLLVYISCCLAGRAYPLGDIPED
LVIQVKNQVFEFLIRLHSADWSEEEEVFPFIRTLLHFDTREFLNVLAMTFEDFKNDKQAL
EYQQRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCCP
DDDSRHTERQQVLLELLQVGGVVQFNEERLLALAEKAKFYQICEFLYEKKHLYDRILDCY
LRDPLRKGEIFSYIHNLLSMPGYSPEEKQTVKEKVLQHIQELVTLDPSKSADVVVFHFTE
EVQLIISELEDDELLFKFLSCLLEPREGHHSGTDLPLERDLHERLLELLCRFAPQQLLSF
LQTSQHYRLEEAIQITEMHHHSEATAYLLERKGDFHGAFSVLLETLKEKLCLLTAESDAE
AEDRRHDEDEINDDSTLTRVKDSLNDIIALCHRSSHNLYQQQREALWFPLLETMMASQKL
VKGSNPKHTSEVLKELTMKVLNSMSSFIPLPAIIQRILQDPVYGKGKLAEIQGLILGMLD
TFNYEQTLLETTTSLLNHDLHWSLAHLRAAVTRGLHPRQDYCNICLQQYKRRQDSAEEII
VFSCGHLYHFQCLQQKDCGWRLASERQQRWSCYKCSSSQGGKGGSSTEPNRSRSTSLAQT
RVTSVHHDAGAEAHRKKVFVEASLDLQQEQSWDQLRSLYRGPSRLSILSELSHCHSEKAG
PLIPAQPGAEHFQLKLSPPPLLEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtccccggacgcccgcagcctgctgtctgcctcctcccagctcaacctgatg
gaggtggacacgatcgatgataaggagtttgacattccccaagtggacacacctcccaca
ctggagagcatccttaatgagctggacgatgaggaggagccctttatgttggaagacaca
tgcacactgagcacagacaacatggatgctcattcctgtgacacatcctctctggccagt
tcggacagtggagaccctgcacatctcaaacgaaaaaggaggacggtggatctaaatgcg
acagttcatgggtctgttcttcgacacagcctgctgaagggaatctctgcacaaatcgtc
tcagctgctgacaaagtggatgctggactgccaactgctataacagtgtcgggtgtgatc
gctgtggggacgtctcatggtctggctctggtttttggaaaagataccaaccaggccctg
cgactctgcctgggcaccaagacaactggggcagagtttggagctgtctccgccctcagc
atcaaccacgattgctcacgacttctctgtggatttgccaaaggacagattacaatgtgg
gatctagccaatgggaaacttctgagaactatcaccgatgcccatcctccagggacagct
atactgcatattaagtttacagacgacccaactcttgcagtgtgcaatgacagtggagga
tcagtgtttgagctggccttcaggagagtaatggggatgcgcacctgtgactctcgatgt
ctcttcagtggctctaaaggggaggtctgctgtattgagcctctgcgtgctcctccagac
ttcagagaccatcccatcacacactactctctactggccatggcctctctcactaaaatt
ctggtcattggtctgaagcccaccctgaaagtctggatgacttttccctacagcaagtct
gatccatccagcgttcctcagctggcctggcagtttgttcctgttcagaagacagtcaac
cctatcctggctttttgtaaaggagacaccgtccacttcctgctggttaaaaaggaggag
acggggaccatccatgtcatcaaacaaagacaactccacctcagctgtgacatcatcagc
ctgagttggatcaacagtcgcacactggtcctggtagacagccatgaaaagctgcacgtt
gtggaccggcccagtcaggaggttttggagacgctggacttggagcaggtgcaactggtc
tataacagccgacatttcaaatcgctggctactggagggaatgtctcccaggctctggct
ttagttggagagaaggcctgctaccagtcggtgtcaagctatgcaggacagatcgtctat
ttgggcactaagtcggctcacattatgactctacgaaactggagagagcgtttagactgt
ctgctgaaacaggagcattttgctgaagcgctcactttggcctggtctttccatgaggga
actgctaaagctgtggttggcctgtttggagatccgataaaaaggaagggagtggtagct
gacaagatggcagagatcctttgccagtttgctgatcacgctttgaagaagtgtccagaa
caaggcaagatccaagtgatggagcaacatttctatgatgtggttccagtcctggtggat
tactgcctgctgctacagagagctgacctgctgttcagccatctgtatgctcgcctggtg
gagaacacagtttcaaagggagttttcctggagtcgctggagtcatacattgttgctgat
cgccttggtcacttgaccacacccatcatgagggacctcctggctcattaccatggcaac
ggcatgatggacagtctggagagatgcatagtccatctggatgtgaccagcctggacata
cagcaggtcgttcaagtgtgttgggagaatcagctctatgatgcgatgatctacgttttc
aacagcggcatgaatgactacattacacctatggagaaactgtttgcagtgattggacca
ccacttagggaggggagaagcctaacagatgaggaagtggtgatgggaaacaagcttcta
gtgtacataagctgttgcctagcaggaagagcgtacccactaggagacatccctgaagac
cttgtgattcaagtcaagaaccaggtgtttgagttcctgatccgtctccactcagctgat
tggtcagaggaggaggaggttttcccctttattcgtacactcctccactttgacacgcgg
gagttcctcaatgtcctcgccatgacatttgaagactttaagaatgacaagcaggccctt
gagtaccagcagaggatagtggacatcttactccaggtgatggtggacaacccagacttc
actccctcccaggtgggcgggctcttcacctttttggctcgacagttggccaagccagac
aacacgctttttgtgaacagaaagctctttgatcaggttctggagttcctgtgttgccct
gacgatgactcccgacacacagagaggcagcaggtgctcctggagctgctgcaggtcgga
ggtgtggtgcagtttaatgaagaaaggttgttggctttggcggagaaggccaagttctac
cagatctgtgaattcctttacgagaagaaacatctctatgacaggatcctcgactgctac
ctgagagaccccctgcgaaagggggagatcttcagctacatccacaatctgctgtccatg
cctggctacagccctgaagagaaacaaacagtgaaggaaaaagtgctgcaacacatccag
gagctggtgacacttgaccccagcaagtcagccgacgtagtggtgtttcatttcactgaa
gaggtgcagctaatcatctctgagcttgaggatgatgagctacttttcaagttcctcagc
tgcctcctggagccccgggaagggcatcattcagggaccgacctgcctctggaacgtgac
ctccatgagcgtctgctggaactactgtgccgctttgcaccccagcagctcctgagcttc
ctccagacctcccagcactacagactggaggaggccatacaaataacagagatgcaccac
cacagtgaagccacagcctatctgctggagaggaagggcgactttcatggagccttttct
gtcttgttagagacactgaaggagaaactgtgtctcctcactgcggagagtgacgcagaa
gcagaagacagacgacatgatgaagacgagataaatgatgattcaacactgaccagagta
aaggattcactgaatgacatcatcgccttgtgtcatcgaagctcacacaacctctaccag
caacaaagagaggctctgtggtttccacttctggagaccatgatggcttctcagaaacta
gtgaaggggtccaatcccaaacacacctctgaagtgttgaaggagctgacgatgaaggtt
ctcaactctatgagcagcttcattcctttgcctgccatcatccaacgaatactgcaggac
ccggtttatgggaaaggaaagcttgcagagatccaaggccttattctgggtatgctggac
acctttaactatgaacagactttacttgaaacaaccactagtctgttgaaccatgacctc
cactggtccctggcacacctccgtgctgctgtcacaaggggactccacccacgccaggac
tactgtaacatctgcctccagcagtacaagagaaggcaggattcagctgaagagatcatt
gtgttcagctgtggccacctgtaccacttccagtgcctgcagcagaaggactgtgggtgg
cgccttgcttcagagcggcagcagcgctggagctgctacaagtgttcctccagccaagga
gggaagggagggtcttccactgaaccaaacagaagccgcagcacgtccctggcacagact
cgtgttacatcagtgcatcatgatgcaggagcagaagctcacagaaagaaggtgtttgtt
gaggcatcattggaccttcagcaggaacagtcctgggatcagctacgctctttataccga
ggaccatccaggttgtccatcctttcagaactctcccactgccacagcgagaaggcgggg
cctctgatcccggcccaaccaggagcagagcatttccaactgaaactctctcctccacct
ctgttggaggagtag
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integrated database retrieval system
