Hippoglossus hippoglossus (Atlantic halibut): 117776338
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Entry
117776338 CDS
T07778
Name
(RefSeq) DENN domain-containing protein 3-like
KO
K20162
DENN domain-containing protein 3
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117776338
Membrane trafficking [BR:
hhip04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
117776338
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
WDR55
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
uDENN
Beta-prop_WDR75_1st
WD40_2
dDENN
Beta-prop_LRRK2
WD40
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
117776338
NCBI-ProteinID:
XP_034466074
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Position
16:13397420..13411696
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AA seq
1274 aa
AA seq
DB search
MADHLAPALLEACVVVGASNDKLREVYQTINNNGAPEHLLLEPEVLHVLAPPFVSRPQNE
SDVVGAHGKRQRSFPRKKREHHPSAASAPSQGGAAEARGGSEDVSVPTDIDLRALPQLCF
PGGLQVTNEQKDEQFHFLVFTDVFGNKTHGVVMQCYQQILEGISCFHNEAGSSKFSKLFS
AFGFCVISKYPYFNALRDCLSCLLIQLRTCRLSDMEDRVREFAAKLSLVPIPPPGQLHLM
FTLRPLTIVLPSREDKDHPAVDLDLHLPFLCLRPQQILQVLSCLLQEQRVVLFSADWARL
TLVAESLLLFLQPLSWQQPYVPVLARGMLDFLMAPTAFLMGCHLSHFEEVATETDDLILI
NIDGGSVSTSCSDTLDLPQIPPAAADYFTQRCQSLQMNFDLHQCHHATCSDINEQRAQRR
AWQRNLNHDIQRISLELIVNIFRDVSCHLNYEHRVFNSEEFLKTREPAEQLFYTKVLETH
IFHFFLKDRLNKKMDNYARMELSTRTEKQKMKSMVEVARRLTMQEIQARRKSSIMESRLN
KRLGMSLPNLGDDQTLSLQRNNLLTGIILSDSALKNPPKPVKVFKLPDFPASLSFHSVQS
YYSELIQHLSKAIFSVQNENSSLLARFYYLRGFINTLCLRRLDALSDFQNLYKTDTAIFP
TQMVTWLVDSLHRDERQQADQRHELKRLILKVKTENEKPPVEPDDHVKKFKLPRKHLHQD
EFVRCVQECGIVNDVATIHRLFDALTEGKPKQVEPELFRLFYTFWKEKDAEAQDVNLPTE
VIDNLDNSECVYKLSSCVKTSYGVGKIAMTQKRLFLLSEGRPGYLEITKFRDIQEVKIAS
APFLLLRIPSLRIQTSGRPEVFEANLKAETELWNLVVKEMWAGRKMADQHKDPQYMTQAL
TNALLMDAVMGCLQTHRSIVAASKLAYFDKIKHEEPMMVHETTSETLKHKITPSLDMAEP
QTVHVLLYTPGQLTCNGSGIERNPKLWVALSGGKVVVFDAASWSMLQDCIQVGELQLNCM
LGLDQEQVWIGSQDSVIYIIDTHSMSCNKQLTEHRHEVTGLTVDTRDQHNSQQTYSCSCD
GTILQWDSVSLKVKRQFHLSCDRLSSIQIHDGTLWCCCGDSIVELKKTGTPQRRMPLPDD
LQSMPSSFSSFIVIPEQGQLWTGCADSGELCLWHMNNHRHPFKRISLPGSSGVTCMIRVK
DQIWVGCCGQNTVGGQCDGQMRSQVLVVNPESHTVTKELHAHSDSIQTLCSAEDRYVLSG
SARRDGKIAIWKVE
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcatctggctcctgctctgctggaagcctgcgtggtggttggagcatctaat
gacaaactcagggaggtctaccagactattaacaataacggggctcctgagcacctcctg
ctggagccggaggtactgcatgtcctggcgcctcccttcgtcagcagaccacaaaatgag
agtgacgtggtgggtgcacatgggaagaggcaacgctcctttcccaggaagaagagggaa
catcatccttccgcagcctcagccccgagccaaggtggagctgctgaagcgagaggaggg
agtgaagatgtgagcgttcctacagacattgacctcagggctttacctcagctctgcttc
cctggtgggctccaagtaaccaatgaacagaaagatgaacagtttcacttcctcgttttc
actgacgtctttggcaacaagacccatggagtagtgatgcagtgctaccaacaaatactg
gaagggatctcatgcttccacaatgaagccgggtcctctaagttttctaaacttttctct
gccttcggtttctgtgtcatatccaagtatccttacttcaatgccctcagggactgtctg
tcatgtctgttaatccagctgagaacttgtcgtctatcagacatggaggacagagtgagg
gagtttgcagccaaactttcactcgtgccaatcccacctcctggacaactgcatttgatg
tttactttgcgtcctctgacgattgtcttaccgtccagagaggacaaagaccacccagct
gtagatctagacctccacctgcctttcctttgcttgagaccacagcaaatactgcaggtg
ctgtcttgtctcctgcaggagcagagggtggtgttgttctctgctgactgggccagactc
acactggttgcagagagtttgttgcttttcctgcagcctctgtcatggcagcagccttat
gttcccgtcctggccagaggcatgctggactttctcatggctcccaccgccttcctcatg
ggctgccatctcagccattttgaagaggtcgctactgaaacagatgatctgatcttgatc
aacattgatggcggaagcgtttccacttcctgttctgatactcttgaccttccacaaatt
cctccagctgctgcagactacttcacacagaggtgtcagtctctgcagatgaatttcgac
ttgcatcagtgtcaccacgcaacctgcagcgacatcaacgagcagcgggcgcagagacga
gcgtggcagcgcaacctcaaccacgacatccagaggatctcgctggagctcatcgtcaac
atatttagggatgttagctgccatcttaactatgaacatcgagtgtttaacagtgaagag
ttcctgaaaaccagagagccggccgagcaactgttttacacaaaggtgttggagactcac
atcttccacttctttctcaaggatcgtctcaacaagaaaatggataattacgctcgcatg
gagctcagcacgcgtactgagaagcagaaaatgaagtctatggtggaagtggcacgcaga
ctcaccatgcaggagattcaggcgcggaggaagagctccatcatggagagcaggctgaat
aaaagactgggaatgagccttcctaacttaggagacgaccaaaccctcagcctccaaaga
aacaacctgctgacggggatcatcctgtctgactctgctctaaagaaccctccgaagcct
gtaaaggtgtttaaactcccagacttccctgcgtctctgtccttccattcagtccagagt
tattacagtgagctcatccagcaccttagcaaggccatcttctccgtccaaaacgagaac
tcttctctgctggccagattctactacctgcgtggtttcatcaacaccttgtgtttgcgg
cggctggatgctctgagtgatttccagaacctctacaagacggacaccgccatcttcccc
acgcagatggtgacgtggctcgtggactcgctgcacagggacgagagacagcaagccgac
caacgacatgagctcaagagactcatcctcaaggtgaagacagagaacgagaagccgccg
gtggagcccgatgaccacgttaagaagttcaagcttccccgaaaacacctgcatcaggac
gagtttgtgcgttgtgttcaagaatgtgggattgttaacgatgtggcgaccatacaccgt
ttatttgatgctctcacggagggcaaaccaaagcaggtggagcctgaactcttcagactc
ttttacaccttctggaaggagaaggatgctgaggcccaagatgtcaacctgcccactgag
gtcattgacaaccttgacaacagcgagtgcgtctacaagttgtcatcctgtgtcaagacc
tcctacggtgtcggtaaaatcgcgatgacgcagaaacgccttttcttgcttagcgaggga
cgacctggctacctggaaatcaccaagttcagagacatacaggaggtgaagatcgcctca
gctccgtttctacttcttcgtattccctcccttcgtatccagacctctggcaggcctgag
gtgttcgaggccaacctgaaggcagagactgagctctggaacctcgtggtcaaagagatg
tgggccggacgcaagatggcggatcaacacaaggaccctcagtatatgactcaggccctg
accaacgccctgctgatggacgctgtgatgggctgtctgcagacccacaggtccatcgtg
gctgcctctaagctggcttactttgacaagattaagcatgaagaacccatgatggtgcat
gaaactacctccgagacactaaaacacaagatcaccccgtcgctggacatggctgagcct
cagactgtgcatgtgctgctatacacaccaggtcagttgacttgcaacggctcgggcatt
gagaggaacccgaagctgtgggtggctctcagcgggggcaaagtggtcgtgttcgatgca
gcgagctggtccatgttgcaggactgcatccaggttggagagctgcagctgaactgcatg
ctgggattggaccaggagcaggtgtggattggctcccaggactccgtgatctacatcatt
gacactcacagcatgtcctgcaacaaacagctgactgaacacagacatgaggtgaccggc
ctcacggtggacaccagagatcaacacaacagtcagcagacatactcctgcagctgtgac
gggacgatcctgcagtgggactcagtcagcctcaaggtgaagcgacagttccacctgagc
tgtgaccggctctcctccatacagatccacgacggcacgctgtggtgctgttgtggcgac
agcattgtggaactgaaaaagacggggacaccccagcgcaggatgccacttcctgacgac
ctacagagcatgcccagtagcttcagcagcttcattgtcatccctgagcaaggtcagctg
tggacgggctgcgcggactcaggggagctgtgtctctggcacatgaacaaccacagacat
ccattcaaaagaatctccctgccgggcagttcaggagtcacctgtatgatccgtgtcaaa
gaccagatctgggtgggctgctgtggtcagaacacagtcggaggtcagtgcgacggtcag
atgaggagtcaggtgttggtggtgaaccccgagagccacactgtgacaaaggagctgcac
gctcactcagacagcatccagacgctctgctcagccgaggatcgctacgtcctgagtggc
tctgcacgccgcgatggcaagatcgccatctggaaagtggagtag
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