KEGG   Hippoglossus hippoglossus (Atlantic halibut): 117776755
Entry
117776755         CDS       T07778                                 
Symbol
mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
hhip  Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:hhip00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hhip03400]
    117776755 (mdc1)
DNA repair and recombination proteins [BR:hhip03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    117776755 (mdc1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 FHA BRCT
Other DBs
NCBI-GeneID: 117776755
NCBI-ProteinID: XP_034466883
LinkDB
Position
16:complement(8890069..8900625)
AA seq 2088 aa
MEATQVISDSFLESDEAENEEEDENKRGQPLAKLCILKNELVPETELPLFLGNNVLGRDL
NACTLHLPAPSISKQHATISLSVYSRRGRRPEGDVEALVWDLGSMNGTRKGRLKLTPNVR
YALSDGDSLVVADIPCQYVSCTVDANSSQGGMRTPVSRDMGVKAGSPDVTEKEGGDKSTD
SKKSENTDTKAGVSSTKTPVRAGCLFLEQTPTQPQGTLVPESDADSDGEREGGGRGRKAL
VSDSDSHKSSPACSTFLSPTNKIVPESEDESPITTSSSSKNRSYRHVRFSKEEIEVDVAG
QRLEEKKTLAIVDDSEEEEGREKETVTPEETKSKESGKHVPVTQEGNVSFMGDDELPVST
LTVTKNVILVLNMDSDTDVEGEEDQSSAGPVTLNINQVSQPPNTAHFQMDSDTDVDEDEG
ALDKDLKTVTSSDDSTKLSHVNSAIQPEGITMDSDTDVDDDAAVSDAATKTKPMSVQSAP
TADSAPLMQPKDFHLDSDTDVEDEDEKECGTNESSSKIDEISIKLETKPAGPESAAAAPH
GLHSESDTDDEEIPAPTLSEPPVVFAVATDSCTAADRGVAILSDSDTDVEDDSPQVMSVA
VTTLSASPGTKPAALESDSDADTDVEGSGQSGSKPTDLGLDSDTDVEDKEADIDEAGDDQ
IPNLCRENTPGLMVPPLQNCSTPIQLTEGEVENMDTQAFVSPSSVPFRGAVAPAVRPVAL
SSCSDSQEDEDFVVAETQSFILQTRDLQSNPPEDHSMEPTQAFCPETSGDETDQPSSRER
SFQLGLSDSRHRQCQAQALAMENTQAFVERGVNMEDTHAYATTSTADRASADNDANLEAT
QDYEEDEEPARHPEKEGRTELVLEETQAYITKPESDSERETDEDERKNITATAETQPFGF
TTSCTPAMAETQPISAFEEEESVAEECEERGGILQPQQRMSGEVLSIAQTQPMNACSNGE
SDDEEEDQTQPLTGSDLSVAETQPMHIGCAETQPMATSDDEDSIPVLRKRRAKQLSEEEL
TQTLTNSEVSAVESQPVDAGEGGESDEKDSITVLKRRRAKPLQLEETQSLSGSEAFAAET
QPMGACEGEQSDEDDSIPVPRKSKAKQLRLEEEETQPLTVGTQPMETGEDKESNDEDSIP
GPRKRKAKALQLKEEETQPLLSSEVPAVESKVTQSEAGTSGISVRDKRGTRARIREEEEQ
AECSESPKRKTRGKSKALPTTRGRRGKSGPVGDVSEEEEELEQGRRTRGRTFTRQQKGNE
EDGGKSEFERNKPAENGNRIKKKQKALGEERGVADLRDKEREKREIEEIERRRMEEQENK
EEQERLHAENMERIRLEETAEKERKEQEEKERVEKEKQRREERETADRIQKEKEQLEKKI
RDNDEKERLEREKAEREEREKLERETKEQEEKERLEREKRELKERLERERREEEHQARLQ
REEKEREERERLEKEKETKEKPIKEQENKSKVSMGGRRASKKTTVAACSTEQDSAELAED
DVPARRTRSRSNSISSISSERSASSINTQQGRGRGRDRGAKRTSEPPKAAVVRSSNRRRT
VAAETTGQDNNDSLNSDISSYSVSSQSRGRGGRQRGRPRITEAEPDSIPPINSQSDQSSA
TKPAARGRKGRKTEPSSSAAPQEDDAEKADSQQARTTRGQRRATTNISESTAADEEKQSN
QDEGHGSEESRLPKRNVWGRAQKSAASAASNGDVAKDKRQERKRQLEPNIEEDSHSRTNI
SVVKVQVVETTQEGGEDESKDENPVQPKRRGRASNAQVKKDTNESPVEVELKKEKENVEK
RGRSRPSAAQKKREEEQEESGTSANSTTQEAKVQTPEPHTPTSRVSQKRQAPANSSPVAK
TPRSSSSSSPAARGRLQAASQAYKVLFTGVADEAWERGLARLGGSMAKGVADMNCLVTDQ
VRRTIKFLCAVAKGIPIVTTCWLEKSGKAGSFLSPHAFVVKDPEQEKKFGFCLQTSLTIA
SSHLLLQGYEIHVTKSVKPEPAQMKDIISCSGGTFLTKMPSSHKPQTVVISCEEDWSLCR
PAVSSSLPVVTAEFILSGILQQKVDFQTHALSAPVTNAGGRRRGRNKT
NT seq 6267 nt   +upstreamnt  +downstreamnt
atggaggctacacaggtgatctctgactcattcctggagtcagatgaggcagaaaatgaa
gaggaggatgaaaataagaggggtcaaccattggctaaactgtgcatcttaaagaatgag
ctcgtccctgagacagagttgcccctgtttttgggaaataatgtgctgggccgtgacctc
aacgcctgcaccctgcacttgccagcgccctcaatatctaagcagcatgccaccatcagc
ctctctgtctacagcagaagaggtcgtcgccctgaaggggatgtagaggctttggtgtgg
gaccttgggagcatgaatgggacccgcaaaggccgcttaaagctgacgcctaacgtacgc
tacgccctcagtgatggtgacagtttggtggtggcagacatcccatgtcagtatgtcagc
tgcactgtagatgcaaactcgtcgcaagggggcatgaggactcctgtgagcagagatatg
ggggtaaaggccgggtcaccggatgtcactgaaaaagagggaggcgacaaaagcacagac
agcaagaaaagtgaaaacacagacacaaaggcgggggtgtcatcaaccaagactcccgtc
agggccggttgcctcttcttagagcaaactccaacccagccacaggggaccctggtccca
gaatctgacgcagactcagatggagaaagagagggaggaggcagagggcgtaaggcttta
gtgtctgattctgactcccataaatctagtcctgcttgttctacattcttgagtcccaca
aacaaaatcgtccctgaaagtgaggatgaaagtcccatcacaacatcctcctcctctaaa
aataggtcgtacagacatgtcagattcagcaaggaagagatagaagtagatgtggctgga
cagcggctggaggaaaaaaagacacttgcgattgtggatgacagtgaagaagaggaagga
agagagaaagaaacagtcacaccagaggaaaccaagtctaaggaaagtggaaaacatgta
ccagtgacacaggaaggaaatgtcagttttatgggagatgatgaattgccggtgtctaca
ttaacagtcaccaaaaatgtgatccttgtacttaacatggacagtgacactgatgtggag
ggagaggaggaccagtcatctgcaggtcctgtgaccttgaacataaaccaagtcagtcag
ccaccaaacactgcccactttcagatggacagtgatacagatgtcgatgaggatgaaggg
gccttggacaaagatcttaaaactgtgacttcctctgatgacagtaccaaactttctcat
gttaattcagctattcagcctgagggaattactatggacagtgacactgatgtggatgac
gatgctgctgtgtcagacgctgccacaaaaacaaagcccatgtcagttcagagtgcaccc
acagctgactctgctcctttgatgcagccgaaagatttccatctcgacagtgacacagat
gttgaagatgaagacgaaaaggaatgtggaacaaatgaatcgagctctaaaatagatgaa
atttccattaaattggaaacaaagccagctgggcctgaatctgccgctgctgctcctcat
ggcctacattccgaaagtgacacagatgatgaagagatccctgcccctaccctcagtgaa
ccccccgtggtgtttgctgtagccacagactcatgcaccgctgcagaccgaggggttgct
attctgtctgacagtgacacagacgtggaagacgattctcctcaggttatgtctgtagct
gtcacaaccttgtcggcctctcctggtaccaagccagcagctcttgagtcagattcggat
gcggacacagatgtggaggggtcaggccagagcggatccaaaccaactgacctcggattg
gacagtgatacagatgtggaggataaggaggcagacattgacgaggcaggtgatgaccag
atccctaacttatgcagagaaaacacacctgggctgatggttcctcctctgcagaattgc
tctactcctatacaactgacagaaggagaggtggaaaatatggatactcaggctttcgtg
agtccctcttcagttccatttaggggtgctgtagctcctgctgtaagacctgtagcattg
tcatcctgctcagacagccaggaggacgaggactttgttgttgctgagacgcagtccttc
attcttcagacccgagatctccaaagcaaccctccagaggaccattccatggaacccacc
caagctttttgccctgaaacttctggtgatgaaactgatcaaccgtccagcagagaaagg
tcttttcaactgggattgtctgacagccgccaccggcagtgtcaggcccaagctctagcc
atggagaacacccaggcatttgtggaaagaggtgtgaatatggaagatacccacgcatat
gctactacttcaactgcagacagagcctctgcagacaatgatgcaaatctggaggctaca
caggactatgaagaggacgaggagcctgccagacatcctgaaaaagaagggcggacagaa
ttggttctagaagaaacacaggcatatatcacaaagccagagagtgattcagagcgtgag
acggatgaagatgagagaaaaaatattactgctactgctgagactcagccttttggcttt
actacttcatgtactcctgccatggctgaaacccaaccaatatctgccttcgaggaagag
gagagtgtggcagaagagtgcgaggaacgtggggggatacttcaacctcagcaaagaatg
tctggtgaggttttatcaatagctcaaactcagcccatgaatgcatgcagcaatggagaa
agtgatgatgaagaagaggatcagacacagcctctcactggttcagatttatcagttgct
gaaacccagcccatgcacattggttgtgcagaaactcagcccatggctacaagtgatgat
gaggactcaattcctgtcctgcgaaaaagaagagcaaagcaactgtctgaagaagagctg
acacaaacgctcacaaactctgaggtctctgcagttgaaagtcagccagtagatgcaggt
gaaggtggggaaagtgatgaaaaagactcgataacagttttgaaaagaagacgagcaaaa
ccacttcaacttgaggagacgcaatccctctctggctctgaagcctttgctgctgaaact
cagcccatgggtgcatgtgagggcgagcaaagtgacgaagacgactcaattcctgtccca
cgaaaaagcaaagcaaagcaactgcgacttgaagaagaggagacacagcctctcactgtt
ggaactcaaccaatggaaacaggtgaagacaaggaaagtaatgatgaagactcgattcca
ggtccacgaaaaagaaaggcaaaggctctgcaacttaaagaggaggagacacaaccgctc
ttgagttctgaggtccctgctgttgaaagtaaagtgacacaatctgaagctggaaccagt
ggaatcagtgttagagacaaacgagggacaagggcaagaataagagaggaggaagagcag
gcagagtgttcagaatctccaaagagaaagacgagagggaagagtaaagctttgccaact
accagaggaaggagggggaaatctgggcctgttggggatgtaagtgaggaagaggaggag
ttagagcagggtaggagaacaagggggagaacatttacaaggcagcagaaaggcaatgaa
gaagatggaggaaagtctgaatttgaaagaaataaacctgcggaaaatggcaaccgaata
aagaaaaaacaaaaagcattgggagaggagagaggtgttgcagacctaagagataaagag
agagaaaagagggagattgaggaaatagagaggcgtagaatggaagaacaagaaaataag
gaagaacaagaaagattgcatgctgaaaacatggagaggatacgacttgaggaaacagca
gagaaagagagaaaggaacaagaagaaaaggaaagagtggagaaagaaaaacagagacga
gaagaaagagaaacagctgatcgaatacaaaaagaaaaagaacaattggagaagaaaata
agagacaatgacgaaaaagagagattggagcgtgaaaaggcagaacgtgaagagagggag
aaattggaaagggaaacaaaggagcaggaagagaaagagagattggaacgagaaaagagg
gaattaaaagagagacttgagagggagaggagggaagaagaacaccaagcaagactgcag
agggaagaaaaggaaagggaagaaagagaaagactggagaaagaaaaagagaccaaagaa
aagccaataaaagaacaagaaaacaaatccaaagtgtcaatgggaggtcgaagagcatcg
aaaaaaactactgttgccgcatgttcaacagagcaagactcagctgaattggccgaagat
gatgtcccagcgaggagaaccagatctcgctccaactcgatcagctcgatcagctccgag
agatctgcgtcaagcatcaacacccagcagggccgcgggagaggtcgagacagaggagca
aaaaggaccagtgagccacctaaggcggctgtcgtcagaagcagcaacaggaggaggacg
gtggctgcagagacaacagggcaggacaataatgattctctcaactctgatatttcaagc
tacagtgtgagctcacaaagcagaggaagaggaggcagacagcggggaagaccaaggata
acagaggctgagccagactctatccctcctatcaatagtcagagtgatcagagttctgct
accaaacctgcagccagaggtaggaagggcaggaaaactgagccatcctctagtgcggct
cctcaggaagatgatgcagagaaggcagattcacagcaggctcgtaccacaaggggacag
cgcagagccacgacaaacatctctgaatcaactgctgcagacgaggagaagcagtccaat
caggacgaaggtcacggcagtgaggaatcacgtcttcctaagaggaatgtctggggcaga
gcccaaaaatctgcagcttcagcagccagtaatggagatgtggctaaagacaaaagacaa
gagaggaagagacagctggagccaaatatagaggaggattctcacagtaggaccaacatt
tctgttgtgaaagtccaagtagtagagacaacacaggaaggaggagaagatgaaagtaaa
gatgagaatcctgtccaacctaagaggagaggtagagcatctaatgctcaagtcaagaag
gacacaaatgaatctcctgttgaagtggagttgaaaaaagagaaggagaatgtcgagaag
aggggcagaagtcggccatcagcggcccagaaaaaaagggaagaggagcaggaagagagt
ggaacatcggccaattccacgacacaggaggccaaagtgcagactccagagccacatact
ccaaccagcagagtatcccagaagcgacaggctcctgcaaattcctctcctgtggcaaag
actcctcgctcctcctcctcgtcttcccctgcagctagaggtcgactacaagctgcgagt
caggcctacaaagtgctgttcacaggcgtggcggatgaagcctgggagagagggctggct
cgcctgggaggcagcatggctaaaggtgtggcagacatgaactgcctagtgactgatcaa
gtgcgcaggactatcaagttcctgtgtgcagtggccaaaggaatcccaattgtcaccaca
tgctggttggaaaagagcggtaaagctgggagcttcctgtcacctcatgcttttgttgtg
aaggatccggagcaggagaagaagttcggtttctgcctgcagacgtctctgacgattgcc
agcagtcatcttctattacagggatatgagatccatgttacgaaatcagtgaagccggag
ccagctcaaatgaaagacataatctcctgcagtggaggaacatttctaaccaagatgccc
tcttctcacaagcctcagactgtcgtgatttcctgcgaggaggactggtcgctgtgccgc
ccggccgtctcttcatcactcccagtcgtcactgccgagttcattctctcaggaatcctt
cagcagaaagtcgactttcaaacacacgcactctctgctcctgtcactaatgcaggaggc
agaagaaggggcaggaacaagacatag

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