Hippoglossus hippoglossus (Atlantic halibut): 117776870
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Entry
117776870 CDS
T07778
Symbol
seh1l
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoporin SEH1
KO
K14299
nucleoporin SEH1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03013
Nucleocytoplasmic transport
hhip04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117776870 (seh1l)
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
117776870 (seh1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117776870 (seh1l)
04131 Membrane trafficking [BR:
hhip04131
]
117776870 (seh1l)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117776870 (seh1l)
Membrane trafficking [BR:
hhip04131
]
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
117776870 (seh1l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
WDR90_beta-prop_4th
WDR55
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
117776870
NCBI-ProteinID:
XP_034467124
LinkDB
All DBs
Position
16:26504831..26514743
Genome browser
AA seq
414 aa
AA seq
DB search
MFVARSIAADHRDLIHDVSYDFHGRRMATCSSDQSVKVWDKSENGAWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHPP
MFAVGSDDSNVSYGGKVQIYEYNENTRKYAKAETLMTVTDAVHDIAFAPDLGRSFHVLAI
ATKDVRIFKLVPMRKDSTSTGPTKFEVQIMAQFDNHNSQVWRVSWNITSTLLASSGDDGC
VRLWKANYMDNWKCAPGILKGDGSPLTAQSGQPTXMSTIVGSSVQTPQNCTERXLSAGRY
FFPPLDSPRAGTRYGHXAAPSSLIEHCDASPXSASTQALPHRHSSRSLLTLPDG
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtagcgcgtagtatcgctgcggatcatagagatctgatccacgatgtgtcgtat
gatttccacggccggagaatggcaacgtgctccagtgaccaaagtgttaaggtttgggac
aaaagtgaaaatggagcgtggcactgcacagcaagctggaagacacacagcggttcagtg
tggagagtgacctgggctcatccagaatttgggcaggttctggcttcctgctcctttgac
aggacagctgctgtgtgggaagagattgtaggcgagtccaatgacaaacagagaggattg
agccactggataaagagaaccacactggtggacagtagaacttcagtgactgatgtgaaa
tttgcccccaaacacatgggcctgatgttgaccacctgctctgcggatggagtggtgagg
atttacgaggctcctgatgtgatgaacctgagtcaatggtccctgcagcacgagatctcc
tgcaagctcagctgcagctgcatctcttggaatccctccagctctcgtgcacatccgcca
atgtttgcagtggggagtgacgacagcaacgtgtcatacggtgggaaagttcagatctat
gagtacaatgaaaatacaaggaaatatgctaaagcagagacgctgatgaccgtcactgat
gcagtccatgacattgcatttgctccagacctgggaagatccttccatgtccttgccata
gcaaccaaagatgtccgaatctttaagctcgttcctatgaggaaggatagcacctctaca
ggacccacaaagtttgaagtgcagattatggctcagtttgacaaccacaactcccaggtg
tggcgtgtgagctggaacatcacaagcaccctgctggcctcctctggggatgatggctgt
gtgcggctctggaaagcaaactacatggacaactggaagtgtgcaccgggcatcctgaag
ggagacggcagcccgctcaccgctcaatctggtcagcccacangcatgagcaccattgtg
ggctcctctgttcagacacctcagaattgcactgaacggtgattgtctgcaggaaggtat
ttctttccacctttggattctcccagagcagggaccaggtatggtcacnntgctgctccc
tcctccctcatagagcactgtgatgcgagcccannttcagcctcaacacaggctctgccc
cacagacactcctctagatcactgctgaccttaccagacggctga
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