Hippoglossus hippoglossus (Atlantic halibut): 117776889
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Entry
117776889 CDS
T07778
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhip03016
]
117776889 (cdkal1)
Enzymes [BR:
hhip01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
117776889 (cdkal1)
Transfer RNA biogenesis [BR:
hhip03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
117776889 (cdkal1)
Prokaryotic type
Methylthiotransferases
117776889 (cdkal1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
117776889
NCBI-ProteinID:
XP_034467148
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All DBs
Position
16:15750782..15979795
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AA seq
564 aa
AA seq
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MPSTCDSLIEDIEDMVSSSDPTPQERLTARKSIMPRSRKRKELPINEELQADSLIPGTQK
IWMKTWGCSHNSSDGEYMAGQLAASGYKMTDDPAEADLWLLNSCTVKNPAEDHFRNSIKK
AQEQEKKVVLAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAIKGHSVRLLGQKKDG
GRRLGGARLDLPKIRRNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVDDFKRVVDFLKERVPGVTIATDIICG
FPGETEEDFQETVDLVKCYRFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKELSHLFH
SYNPYDHEVGERQHVLVTEESFDAQYWVSHNKFYEQVLVPKRDEFKGKMVEVDIYEAGKH
FLRGRPVDDSKLFTPSIAAPLQKGEVSGLVQEQISNGIQSCASISSSSTLLIGSYSLDRE
ALKKLGIGLALAAAVLAFILEKVF
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccacctgtgactctctgattgaagacatcgaagacatggtgtcttctagtgac
cccactcctcaagagagactgactgcaagaaagagcatcatgccaaggtccaggaagaga
aaagagcttccgatcaatgaggagctccaagctgacagtttgatccctgggacacagaag
atctggatgaaaacatggggctgcagtcacaacagctcagatggagagtacatggctgga
cagctggctgccagtggatacaagatgaccgatgacccagcagaagcagacctgtggttg
ctgaacagctgcactgtgaagaaccctgcagaggaccacttcagaaactcaatcaaaaaa
gctcaagaacaggagaaaaaggtggtattagcaggttgcgttccccaggcccagccacgt
atggactacctcaaaggactcagcatcattggggtccagcagattgatcgagtggtggaa
gtcgtggatgaggcaattaaaggccactcggttcggctgttaggtcagaagaaagatgga
ggccggaggctcggaggagcgagactggacctgcccaagatcaggaggaacccactcatt
gaaatcatctccattaacactgggtgtctgaatgcttgtacctactgcaagaccaagcat
gccagaggagacctggccagttatcccattgaggaactagtggagagagccagacagtct
ttccaggagggagtgtgtgagatctggttgaccagtgaagacacaggagcttatggtcga
gacataggaacagatctgcccacgttgttgtggagactggtggaagagattcctgaagga
gccatgctgaggctgggtatgaccaacccaccctatatcctggaacacctagaggagatg
gccaagatattgaatcatccgcgtgtctatgccttccttcatattcccgtgcagtcggcc
tcagacagcgtactgatggacatgaagagggagtattgcgtcgacgacttcaaaagagta
gtggacttcctcaaagagagggtcccaggtgtaaccatcgctactgatataatctgcggt
tttcccggtgagacagaggaagacttccaggagacggtagacttggtgaaatgctacaga
ttccccagtctcttcatcaaccagttctacccccgacctggtacacctgccgccaagatg
gagcaagtaccagcacaagtgaagaagcagaggactaaagaactgtcccatctcttccac
tcctacaacccatacgaccacgaggttggagagaggcaacatgtgttggtgacagaggag
tcgtttgatgcccaatattgggtgtctcacaacaagttctatgaacaggtgctggtccct
aagagggatgagttcaaagggaagatggttgaggtggacatctacgaggcaggaaaacac
ttcctgagaggccggccagtggacgacagtaagctgttcaccccctccatcgcagcacca
ctacagaaaggagaggtgtctggcctggtgcaggaacagatttccaacggcatccaaagt
tgtgcttctatttcctcttcgtccactttgttgatcggctcgtacagtctagacagggag
gctctgaagaagctggggatcggactcgctctggctgcagctgtcttggcctttatcttg
gagaaggtgttctga
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