Hippoglossus hippoglossus (Atlantic halibut): 117777023
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Entry
117777023 CDS
T07778
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117777023 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhip03021
]
117777023 (smarcc1a)
03036 Chromosome and associated proteins [BR:
hhip03036
]
117777023 (smarcc1a)
Transcription machinery [BR:
hhip03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117777023 (smarcc1a)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117777023 (smarcc1a)
PBAF complex
117777023 (smarcc1a)
GBAF(ncBAF) complex
117777023 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
117777023
NCBI-ProteinID:
XP_034467360
LinkDB
All DBs
Position
16:complement(2639304..2657175)
Genome browser
AA seq
1122 aa
AA seq
DB search
MATATAGGTGSGGPATGPVGGGGAALGRKKDGGPSTKFWESSETISQMETVRQWIGKHYK
KYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFQDFKAGGSLCHILGS
VYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKQASKL
KDIIKRHQGSITDDKSKATHHIYPSASQQDEEEWLRPVMRKDKQVLVHWGLYPDSYDTWV
SAGEVDGDVEDPPSTDRPWKVHAKWVLETDAFNEWMNEEDYEVDENKKPVSFRQRIFPKE
EESSRTPDRKERKANSAGKKRRRSPSPPSTPVESRKKGGKKGNPGPHWKRRGHRGEEEDT
EEDMTKDLDDSSAGASLEEGSVSKNASSKKDSENTPVKGGNVADLDDMEDDSVLSGGKDD
EDQGKAEINRLIDAGEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSKT
PEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSDS
RPLPMGPPPTPHFTVLADTPSGLIPLNHRPPPIPPQQPMPNFIDKGKEKSIDLQNFGLRT
DLYKKSAKAKAVTSTRDWTEQETLLLLEALEMFKDDWNKVSEHIGSRTQDECILHFLRLP
IEDPYLESTESTLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRV
REEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTETAEPEKMDTDS
DSQQADKAESKEEAEKPSESAEKSDKTDAADKVKKEGGETSDREEEAEEGGEAKSSPAEK
EKEETMETSPSEQEKEKEEKAAEDEGEEKRKKLEHDIGEGNIATAAAAALASAATKAKHL
AAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHM
EQLKYAEMKARQQMEQQAAAAAAAAAAAAQAQGQAPGSGPPQPGMHPGGPPPHHGGPPPH
HGGPPPGAAMHPGYPPMGHHPMATLHPGPPGPMGPNQPIPGRMMPGPPSAGPPSGGMAPM
MPPRHAGAPNGLYPGPAPAQPEPVPAVPVGPPAPPSARVADN
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcaacggcaggcgggacgggctccggcggaccggccaccggcccggtcggc
ggcggcggggcggcgctgggacgcaagaaggacggcggcccgtccacgaagttctgggag
agctcggagacgatctcgcagatggagacggtgcgccagtggatcgggaaacactacaag
aagtatgtccagaacgactccccctccagtaaatccctggcgggcctggtcgtccagctg
ctgcagttccaggaggacgcgtttggacgcagagtcaacaatcctgctcttaccaagcta
cctgcaaaatgtttccaggatttcaaggcaggaggttccctctgtcacatcttggggtct
gtctacaagttcaagagtgagcagggctggcgtcgatttgatctgcagaatccctcccgg
atggacaggaacgtggaaatgttcttgaatgttgagaagaacttggttcagaataactgc
ctgactcgacccactgtcttcctgtcgccggacatcgagcagaaacaggccagtaagctc
aaagacatcatcaagaggcaccagggctcgattactgatgacaagtcgaaggccacccac
cacatttatccctcagcatcccaacaagacgaagaggagtggcttcgacctgtcatgagg
aaagacaagcaggtgctggtgcactggggtctctacccagacagctatgatacctgggta
tcagccggcgaggtggacggtgacgtggaggatcctccgagcactgaccgaccctggaag
gttcacgccaagtgggttttagagaccgacgccttcaacgagtggatgaacgaagaagac
tacgaggtcgacgagaacaagaagccagtcagcttccgccagaggatcttccccaaagag
gaggagtcttcccgtacacccgatcgaaaggagcgcaaagccaactccgccggcaagaag
aggaggcgctcgccctcgccgcccagtactcccgttgagtctcgcaagaagggaggaaag
aaggggaatcccgggcctcactggaagcgacgaggccacagaggcgaagaggaggacacg
gaggaggacatgaccaaggacctagacgactcgtcggctggtgccagcttggaggagggc
agcgtttccaaaaacgcaagttcaaagaaagacagcgaaaacactccggtgaaaggaggg
aatgtggccgacctggatgacatggaggacgactctgtgctgtctggtggaaaggatgac
gaggaccagggcaaagctgaaatcaaccggctgatcgacgctggcgaggacaacgtgact
gaacagactcatcacatcatcatccccagctacgctgcctggttcgactacaactgcatc
catgagattgagagaagagccctccccgagttcttcaacggaaagaacaagtccaaaact
ccagagatatacctggcctatcgtaacttcatgatcgacacgtaccggctgaaccctcag
gagtatctcacctccacctcctgccgcaggaacctgaccggagatgtgtgcgccatcatg
agggtccatgcgttcctggagcagtggggtttggtcaattaccaggtcgactcagatagt
cgccctctgcccatgggccccccacccacaccccacttcactgtgctggctgacacaccc
tccggcctcatacccctgaaccacagacccccaccgattcctcctcaacagccgatgccg
aacttcatcgacaaaggcaaagagaaatccatcgacctgcagaactttggccttcgcacc
gacctctacaagaaaagcgccaaggctaaagccgtcacttccaccagggactggaccgag
caggagactctcctgctgctggaggctctggagatgttcaaagacgactggaacaaagtg
tcggagcacataggttcccgcacccaggacgagtgtatcctgcacttcctgcggctgccc
atcgaggatccctacctggagagcacggagtccactctgggccctctggcctaccagccc
atacccttcagccagtctggaaaccccgtcatgagcactgtcgccttcctggcctctgtg
gtcgaccccagagtcgcatctgctgcggccaaggcagctctagaggagttttcccgtgtg
cgtgaggaggtgcctgctgagctggtggaggctcatgtgaagaaggtgcaggaggcggcg
aggagcacaggaaaggtggaccccgccttcggcctggagagcagtggcatcgctggcacg
gcccccgaggagccggaaaagaccgaaaccgcagagccagaaaagatggacacggactcg
gactcccaacaggctgataaggcggagtcgaaggaggaggcagagaagcccagtgagtct
gcagaaaagagcgacaagacggacgctgcggacaaggtgaagaaggagggaggagagacg
tcggaccgcgaggaggaggcagaggaaggaggagaggccaagtcgtctccagcagaaaaa
gaaaaggaggagaccatggagacatcgccctcagagcaggagaaggagaaggaggagaag
gcagctgaagatgagggagaggagaagaggaagaagctggagcacgacatcggagaggga
aacatcgccacggcggccgcagctgctctggcatctgctgccaccaaggccaagcacttg
gcggcggtggaggagaggaagatcaagtccctggttgctctgctggtggagacgcagatg
aagaagctggagattaagctgaggcacttcgaggagcttgagaccatcatggaccgagag
aaagaagcgttggagctccagcggcagcagctgctcaccgagcgccaggcgttccacatg
gagcagctcaaatacgccgagatgaaggcgaggcagcagatggagcaacaagctgctgct
gctgccgccgccgctgctgcagctgcccaggcccagggacaggcccccggatctgggccc
cctcaaccaggcatgcaccccggaggaccccctccacaccacggaggaccccctccacac
cacggaggaccaccgcccggtgctgccatgcaccctggctaccccccaatgggtcaccac
cccatggccactctccacccaggaccgccgggaccgatgggaccaaaccagccgatacct
ggacgtatgatgccggggccgccctccgcaggccccccgtctggcggcatggctcccatg
atgcccccacgccacgctggagctcccaacggcttgtaccctggcccagcacctgcacaa
cctgaaccggttcctgcagtccctgtgggtcctccagcccccccgagtgcacgagtggct
gacaactaa
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