Hippoglossus hippoglossus (Atlantic halibut): 117777053
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Entry
117777053 CDS
T07778
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117777053 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hhip03041
]
117777053 (dhx16)
Enzymes [BR:
hhip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117777053 (dhx16)
Spliceosome [BR:
hhip03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117777053 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
Flavi_DEAD
PWI
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
117777053
NCBI-ProteinID:
XP_034467434
LinkDB
All DBs
Position
16:complement(4960817..4973597)
Genome browser
AA seq
1049 aa
AA seq
DB search
MANLEQWVNDRLHDILGLSDRYVAQFMIGTARKAMNAEDFVTRLEQTGTIDINPSVIAFA
TELFDKIPRKLVVEKPAREIERQAIEMDRKNRTYTLLEDSVSDEETVVEKQKGKKKSKDR
GNKRKHIRKKKESESSSEDEAPKGGNAGQSVQKEVEEEEEEWEKEERERVQDIEERDAFA
ERVRLKDKDKTRNIAERTDKKAYEEAQKRLKMAEEDQNQMLPELRKQSRWEYLKKRESEK
LEDLEAEIIDDEYLFSTDELTQREKKELEYKRTLRDLAKDYKKAGAKEHEERKNRYYMPE
EKRGKEVPQRDLVLEESPMELGGEQGRWEEERLKTASLSFGAKKERELGMRHEQDKYQLI
LEEEEMIDFVSTAITMKGTRADKDQEEPSLSQAEQKKQSMQEVRRSLPIFPFREDLLAAI
QKHQILVIEGETGSGKTTQIPQYLLENGYSEGGMKIGCTQPRRVAAMSVAARVAQEMGVK
LGNEVGYCIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVILIDEAHERTLHTDIL
FGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEADYL
EACVVSVLQIHVTQSPGDVLVFLTGQEEIEACCELLQERCRRLGSKIAELLVLPIYANLP
SDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVT
PCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEDSTVPEIQRTNLGNVVLLLKSLGI
NDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMMSKMILASE
QYKCSEEVLTIAAMLSVNNSIFYRPKDKMVHADNARMNFVVPGGDHLVLLNVYTQWVESG
FSTQWCYENFIQFRSMRRARDVREQLEGLMDRIEVEVVTSPEDSVPIRKAVTAGYFYHTS
RLSKGGYKTVKHQQTVYTHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSAWLLEVA
PHYYKSKELEDTSSRKMPRKQGKTKDELG
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggctaatctggagcagtgggtcaatgaccgtctccatgacatcctggggttgagtgac
aggtacgtggctcagttcatgattggcaccgcacggaaagcgatgaatgcggaagacttc
gtgactcgcctcgagcagacgggcacgattgatatcaacccgagtgtgattgccttcgcg
acagagctcttcgacaagattcctcgcaagctagttgttgagaaacccgcccgggagata
gaacggcaagccattgaaatggacaggaagaatcgcacatacacgttactggaagacagt
gtaagtgatgaagaaactgtggtggagaaacaaaaagggaaaaagaagagtaaggacaga
ggaaacaagaggaagcacatcagaaagaagaaagagagtgagtcgtccagtgaggatgaa
gcacctaaagggggtaatgcaggccagtcggtccagaaagaagtagaagaggaggaggaa
gaatgggagaaggaagagcgagagcgagtgcaagacattgaagagagagatgcatttgcc
gagcgagtgaggctgaaagacaaagacaagacccgcaatatagcggagagaactgacaaa
aaggcttacgaggaagctcagaagaggctgaagatggctgaagaggatcaaaatcaaatg
ttgccagagttgaggaagcagtctcgctgggagtatctaaagaagagagagtcagagaag
ctggaggacctggaggccgagatcattgacgacgagtaccttttctctaccgacgagctg
actcagagggagaaaaaggagttagaatacaaacgcacccttcgcgacctggctaaagat
tacaaaaaggccggtgccaaggaacacgaggagaggaagaacagatactacatgccggaa
gaaaagagaggcaaggaggtgcctcagagggacctggtgctggaggaatctcccatggag
ctgggaggggagcaaggccgctgggaggaggagaggctgaagacggcctctctcagcttc
ggggcaaagaaggagcgagagctggggatgaggcatgagcaggacaagtaccagctgatc
ctggaggaggaggagatgatcgacttcgtcagcactgccattaccatgaagggaactcgg
gccgataaggatcaggaggaaccgtctctgtcgcaggcggagcagaagaaacagtccatg
caggaggtccgacgcagccttcccatcttccctttcagagaggacctgctagccgccatc
caaaagcaccagatcctggtcattgaaggggagacgggctccggaaaaaccacccagatc
ccacagtatctcttggaaaacggctacagtgaaggaggcatgaagatcggatgcacgcag
cctcgcagagtggcagccatgtcagttgcagcccgagtggcacaggaaatgggagtcaaa
cttgggaatgaggtgggttactgcattcgttttgaagactgcacatcagagagaacggtg
ctcaagtacatgaccgacggcatgctgctccgagagtttctcaccgagcccgacctggcc
agctacagtgtgatcctcatagacgaggcccacgagcgaactctccacacagacatcctg
ttcggtctgattaaagacatcgccaggttcagacccgacctgaaggtgctggtggccagc
gccactctggacaccgagcgcttctcctgctttttcgacgacgcacctgtcttcaggatc
ccaggcaggaggttccccgtcgatatcttctacactaaagctccagaggccgactacctg
gaagcatgtgtggtgtcagtgctacagatccacgtcacccagtctcctggagacgttctg
gtcttcctcactggacaagaggagatcgaagcgtgttgcgagctgctccaggagagatgc
aggcggctgggatctaagatagctgagctgctggtacttcccatctacgccaacctgccg
tctgacatgcaggcaaagatcttcaaccccactccacctggcgcccggaaggtggtggtg
gctaccaacatagcagaaacttccttgaccatagatggcatcatctacgtcattgatcct
ggtttttgcaagcagaagagttacaatgcccgcactggcatggagtcgctcattgtcacg
ccctgctcacgggcttcagccaaccagagagcaggccgtgcaggcagagtggctgctggg
aaatgtttcaggctttacacagcgtgggcttttaaacatgaaatggaggattcgactgtg
cctgagattcagagaaccaacctgggaaacgtagtccttctgctgaagagtctgggcatc
aatgacctcattcactttgacttcatggacccacctcctcatgaaactctggtcttggcc
ctggagcagctctacgctctgggagcactcaaccacctgggagagctcaccaagctgggt
cgcaggatggctgagttacctgtggaccccatgatgagcaagatgatcctggcctccgag
cagtacaagtgttcagaggaagtgttgacaatagccgccatgctgtcggtgaacaactct
attttctaccggcccaaagacaagatggtgcacgccgacaacgccaggatgaactttgtg
gtgccagggggagaccacctggtgctgctcaacgtctacacacagtgggtggagagcggc
ttctccacacagtggtgctacgagaactttatccagttccgctccatgagacgagcccgg
gatgtcagggagcagctggagggtctgatggatcgcattgaggtggaggtggtcacctcc
ccggaagacagtgtgcccattcgcaaggcggtgacggcaggatatttctatcacacgtcg
cgactgagcaaaggcggctacaagacggtaaagcaccagcagacggtctacacccacccc
aacagctcgctgttcgaggagcagcctcgctggctcatctaccacgagctggtcttcacc
acgaaggagttcatgagacaggtgatcgaaatagacagtgcatggctgcttgaagtcgct
ccccactactacaagagcaaagagctggaggacaccagcagcaggaagatgccccgtaaa
caggggaaaaccaaagatgagctgggttga
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