Hippoglossus hippoglossus (Atlantic halibut): 117777228
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Entry
117777228 CDS
T07778
Symbol
cnot10
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 10
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117777228 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhip03019
]
117777228 (cnot10)
Messenger RNA biogenesis [BR:
hhip03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117777228 (cnot10)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_14
TPR_19
TPR_8
ANAPC3
TPR_7
ARM_TT21
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
117777228
NCBI-ProteinID:
XP_034467751
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Position
16:18869860..18880014
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AA seq
735 aa
AA seq
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MAENSEQNEAKHDNSSSPGMTDHEKEMAASAYEAFLAGKYDDSLKHLDALQELNKEDYKI
SLNKAVVEFYKSGQSTTGNLKQTLVTMKNQVHTSAEDVDGLDDVENSLLYYNQAIIHYHM
RQYSEAILIGERLYQFLEPFEEKFAQAVCFLLVDLYLLTFQPEKALHLLAVLDKLSVQGS
NKNGKGENNSSNKEGANQKAEFAAMIEAAKSKMHQYKVRAYIQMKSSKACKREIKSVMNT
AGNSSPSLFLKSNFEYLRGKLRKAVKLLNSSNIAEHPGPIKTGECVRCMFWNNLGCIHFA
MGKHNLGIFYFKKALQENDHTCAQLGDGNNGQSKKFTGIPMCALLANKRYELLYNCGIQL
LHIGRPLAAFECLMEAVQVYHSNPRLWLRLAECCIAANKGGSEQENKGLPCKKGIVQSIV
GQGYHRKIVLASQSTQNTIYSEGQSAAIPVASMEFAAICLRNALLLLPEHQQQDTKTENG
SKSFSQSGSTESGSENSDACSGKGQDADKFLSAAPSSPLRKQEVENLRCSILACSAYVAL
ALGDNLMALNHAEKLLHQTKVSGSLKFLGHLYAAEALISLDRISDAIAHLNPENVSDVSM
GVLSSEQDQGSEKGDEPVESSGKQTPLCYPSSVTSARAMMLFNLGSAYCLRSEYDKARKC
LHQAASMVNTKEIPPEAILLGVYLELQNGNTQLALQIIKRNQLLPTAVQRVSPDSRKKQV
QPFQLPSSFTQVQRK
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaattcagaacaaaacgaggcaaaacatgacaactcatcatcccctggaatg
actgaccatgagaaagaaatggcagccagcgcatatgaggcatttttggcagggaagtat
gacgactctctcaaacacctcgatgccctgcaggagctcaacaaagaggactacaagatc
tccctgaataaagctgttgtagaattttataaaagtggtcagtcgaccacagggaatctg
aagcagaccctagtcacaatgaagaaccaggttcacacgtcagcagaagatgtcgatggg
ttggacgatgttgaaaacagtttgctgtactataatcaagccatcatccactaccatatg
cgacagtactctgaagccatcttaataggagagaggttgtaccagtttctggaaccattt
gaagagaagtttgctcaggctgtgtgcttcctgctggtggatctgtacctgctcaccttc
cagccagagaaggccctccaccttttggctgtgctggataaactctctgtgcaaggcagc
aacaagaacggcaaaggagagaacaacagttcaaacaaagaaggagccaaccagaaagca
gagtttgcagccatgattgaggcggccaaatcaaagatgcaccagtacaaagtgagagcc
tacattcagatgaaatcttccaaggcctgtaaaagggagatcaaatccgtgatgaacaca
gcagggaattcttcaccctctctcttcctcaagagtaattttgagtacctcagaggaaaa
ctacggaaagcagtgaagctattgaacagctccaacattgcagagcatcctggtcccatt
aagacaggtgaatgtgttcgatgtatgttctggaacaatctgggctgcattcactttgcc
atggggaaacataacctcggcattttctacttcaagaaggcgctgcaagagaacgaccac
acctgtgcacagctgggagacggcaacaacggccaatctaagaagttcacaggcatcccc
atgtgtgctctactagccaacaagcgctatgagctgctctataactgtggtattcagctg
ctgcacatcggcaggcctctggcagcatttgagtgtctgatggaggcggtgcaggtttac
cactccaaccctcggttgtggttacggctcgcagagtgctgcatcgctgccaacaaaggg
ggctcggagcaggagaacaaaggtttaccttgtaaaaagggtatagttcagtctattgtt
ggacagggctaccatcgcaagattgtgctggcatcccagtctacccaaaataccatctac
agtgagggccagtcagcagcgataccagttgccagtatggagtttgcagccatctgcttg
aggaacgctctgctgctgctgcctgaacatcaacagcaggacaccaagacagagaacggc
tccaagagcttcagtcagtcaggaagcacagagagcggcagcgagaacagtgatgcctgc
agtgggaaaggtcaggatgctgataagttcctatctgcagctccatcatctcctctcaga
aaacaggaagttgaaaatctcaggtgctccatcctggcatgcagtgcgtatgtggcattg
gcactgggagacaatctgatggctctaaatcatgctgagaaactgctgcatcaaaccaag
gtgtctggatcgctcaagttcctgggtcacctctacgctgctgaagccctcatctcattg
gacaggatctctgacgccattgctcatctcaacccagagaatgtcagtgacgtgtcaatg
ggagtgctgagcagtgaacaagaccaagggtctgagaaaggagatgagcctgtcgagtcc
tcagggaagcagacaccactgtgttacccaagcagtgtgacatcagctcgggccatgatg
ctcttcaacctgggcagcgcctactgcttgaggagcgagtatgacaaggcccgcaagtgc
ctgcatcaggcagcatctatggtgaacaccaaggagattccaccggaagcgatcctgctg
ggagtctacttagagctacagaacggaaacacccagctggctctgcagatcatcaaacgg
aaccagctgctgcccacagcagtccagagggtctcgccagactcccgcaagaaacaggtc
cagcccttccaactgccctcatcctttacacaagtgcagcgcaaatga
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