KEGG   Hippoglossus hippoglossus (Atlantic halibut): 117777416
Entry
117777416         CDS       T07778                                 
Symbol
xrcc1
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
hhip  Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:hhip00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    117777416 (xrcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hhip03400]
    117777416 (xrcc1)
DNA repair and recombination proteins [BR:hhip03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     117777416 (xrcc1)
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT
Other DBs
NCBI-GeneID: 117777416
NCBI-ProteinID: XP_034468088
LinkDB
Position
16:complement(5410000..5428236)
AA seq 625 aa
MPEIKIKHVVSCSTEDTTHKADNLLSSDTYRKWKAARPGEKQTSVILQLEKEEQVHSIDI
GNEGSAFIEVLVGNSSAVRDQDYEVLLVTSSFMSPTESRGGTNLNRVRFFGPTQLQKSTA
QEKWDRVKLVCSQPYSKNIAYGLAFVKFHSPPDKNDPPPTASPKLTKLGQFKVKDESPSS
GPSLQPGSLFFSRDSTTKTSPSLKVSPQSDKLSYAAAALQTGGTSQLSGQASSSSTVSPQ
PPAKRKFEFNKERQSAPGPPPTKKISPAGSPEGKAATPKNKPSPASTSSSSAAKASLTPK
SPDKKRQSLSKSETKPKQQKTKSQVPFNRILEGVVFVLSGFQNPYRGELREKAVDMGAKY
RPDWTPGATHLICAFANTPKYSQVKSAGGIIVRKEWVMDCHKRKEQISYKRYLMDGGESS
SESEMEVDNQSEEEMDTKTPQKQERRVTPKKTPEKRSEDDDEYGGSTDVDEPGDDDESAV
DTEDELQRVEKENRQKKKASAGVKTVKEEDPYGGSTDENTDAEAEEDHPIPELPDFLSGK
HFFLYGKFPHNERRLLLRYIVAFNGVIEDYMTEKVQFVVTSEGWHDSFEDALMDNGNLNF
VKPTWIHAINERQKLLPYQPYSVVP
NT seq 1878 nt   +upstreamnt  +downstreamnt
atgcccgagatcaagatcaagcacgttgtgtcctgcagcaccgaggacaccacccacaag
gcggacaacctgctgagctctgacacctacaggaagtggaaagcagcgagacccggggag
aagcagacatccgtcatcctgcagctcgagaaggaggagcaggtgcacagcatcgacatc
ggaaatgaaggctcagctttcatcgaggtgctggttgggaattcctccgctgtcagagac
caggattatgaggttcttctggttacctcttccttcatgtctccaactgagagccgcggt
ggcaccaatttgaaccgggtgcgtttctttgggcccacccagctgcagaagagcacagcc
caggagaagtgggacagagtgaaacttgtttgtagccagccttacagcaagaacatagca
tatggtctggcctttgttaagtttcattcaccgcctgacaaaaatgatcctcctccaaca
gcttcccctaagctgacaaagttgggacagttcaaggtgaaggatgagtctccgtcatct
gggcccagccttcagccgggcagtctcttcttcagtcgggacagtacgaccaaaaccagt
ccttctctcaaagtgtctcctcagagtgacaagttgagttacgctgctgctgccctgcag
accggtggcacctcccagttgtcgggccaagcctcgtcctccagcactgtctcgccacag
ccaccagcaaaaagaaaatttgagttcaacaaagagcgccagtccgcccctggcccccct
cctacgaagaaaataagtccagctggctcacccgagggtaaagccgcaacccccaaaaac
aagccgagtccagccagcacatccagctccagcgctgcgaaagcttccctgacaccgaag
tcccccgacaagaagaggcagagtttgtccaaatccgaaactaaacccaaacaacaaaaa
acaaaatcccaggtcccattcaaccggatcttggaaggagtggtgtttgtactcagtggc
ttccaaaacccatacagaggggagctgagggaaaaggctgtggatatgggagccaagtac
cggcctgactggacgcccggcgccacacacctcatctgtgcctttgctaacacgcccaag
tacagccaggtgaaatcagcagggggcatcattgtacggaaagaatgggtgatggactgc
cacaagaggaaagagcagatctcctataaacggtatttgatggatggtggcgagtcgagc
tcggagagtgaaatggaagtggacaaccagagtgaagaggaaatggatacaaagactcca
cagaagcaggagagacgagtcacccccaaaaaaacaccagaaaagaggagtgaagacgat
gatgaatatggtggctccactgatgtggacgaaccaggagatgatgacgaatctgccgtg
gacacggaggacgagctgcagagagtggagaaggagaacagacagaagaaaaaagcgtca
gccggtgtgaagacggtgaaagaggaggatccatacggggggtcgacagatgaaaacaca
gacgctgaggctgaagaggatcatcccatccctgagctaccagacttcctgagcggaaag
cactttttcctctacggtaaattccctcacaacgagcgacgcctactgctgcgatacatc
gtggcctttaatggagtgatcgaggactacatgacggagaaggtgcagtttgtggtgacc
agtgaaggctggcatgactcttttgaagatgcactgatggacaacggcaatctgaacttt
gtcaaacctacctggatccacgccatcaacgaacggcagaagttgctgccctatcaaccg
tactctgtcgtcccctga

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