Hippoglossus hippoglossus (Atlantic halibut): 117777711
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Entry
117777711 CDS
T07778
Symbol
npc1
Name
(RefSeq) NPC intracellular cholesterol transporter 1
KO
K12385
Niemann-Pick C1 protein
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip03265
Virion - Ebolavirus, Lyssavirus and Morbillivirus
hhip04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
117777711 (npc1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
117777711 (npc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hhip02000
]
117777711 (npc1)
Transporters [BR:
hhip02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
117777711 (npc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NPC1_MLD
NPC1_N
Sterol-sensing
Patched
MMPL
Motif
Other DBs
NCBI-GeneID:
117777711
NCBI-ProteinID:
XP_034468484
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Position
17:complement(17098797..17112405)
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AA seq
1272 aa
AA seq
DB search
MWLPHSRRTLCLLVFTVLLSQECLRWVEAQHCVWYGECGESQLVRGKKYNCNYTGPPIPL
QSEGFELLTELCPGYDYENRSLCCNVDQLRTLKGSLQLPLQFLSRCPACFFNLMNLFCEL
TCSPHQSQFMNASEINGTSVTEVQYYVGQRFASAMYNACKDVQAPSTNVKAISIVCGKDA
KDCNATNWIQFMFDINNGQSPFPIIPIFSDVPVSGYTPMNNKTYACTEGLEDGSGPCSCQ
DCTNACGPRPVPPPLPPPWTIFGIDAMTVIMWISYVAFLLIFFGAVLIAWCYRKRRIMSE
YGPILDSNNPLSLNSDNPDHVNASCCESLGERFENALRVFFCSWGSFCVRHPSVVILGSL
IVVVASSGGLVYMRITTDPVDLWSAPTSQARQEKDYFDKHFGPFFRTVQLIITTPINDTT
VYSPYPAGSDVPFKAILDKDILHQVLDLQLDIEAIVAPYKDQTVTLKDICLAPLAPYNDN
CTILSVLNFFQNSHAVLDHTKGDEFFVWADYHSHFLYCVSAPASLNDTTALHDPCLGTFG
GPIFPWLALGGYDETNYNNATALVITFPLNNYLNDSVRLDKALAWEKEFIKFMKNFTNPN
LTIAFSAERSIEDEINRESNSDISTIVISYAIMFIYISLALGHIQSCRRVMVDSKISLGI
AGILIVLSSVSSSLGIFSYAGIPLTLIVIEVIPFLVLAVGVDNIFIIVQTYQRDERMPHE
ELHQQIGRILGDVAPSMLLSSFSETVAFSLGALTNMPAVRTFSLFAGLAVFIDFLLQISC
FVSLLGLDAERQEGNRLDIICCVKLPEGQETKTDGFLFRFFKKVYAPFILKEWVRPIIVA
VFVGVLSFSIAVMNKVEIGLDQKLSMPDDSYVLDYFKNMSEYLHTGAPVYFVVEDGVNYS
SLEGQNVVCGGVGCNNDSLVQQVYSASLISNYTTIALTPSSWLDDYFDWVKPQSTCCRYI
NATGAFCNASVVNSSCVHCRPMTPSGKQRPEGEDFMKFLPMFLSDNPNVKCGKGGHAAYG
TAVDLYPNDAGVGATYFMTFHTILKESPDFINGLKMARNLAHNISQSMNHKVFAYSIFYV
FYEQYLTIAYDTALNLSVSLAAIFVVTAILLGFELWSAVVVCITIAMILVNMFGVMWLWG
ISLNAVSLVNLVMTCGISVEFCSHIVRAFSISVKKNRVERAEEALAHMGSSVFSGITLTK
FGGIIILGLSKSQIFKVFYFRMYLAIVLLGATHGLIFLPVLLSYIGPSVNKAKVFAANKR
NAGTERERLLNY
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgtggctcccacacagcagacgcactctgtgtctcctcgtcttcactgtcctcctgtcg
caggaatgtctacgatgggttgaggcacagcactgtgtctggtatggggagtgtggggag
tcccaactggtgcgtgggaaaaagtacaactgtaactacactggtcctcccatccctcta
cagtctgaggggtttgagcttctcacggaactttgtcctggatatgactatgaaaatcga
agcctctgctgtaatgtggaccagttgcgcactctcaaagggagtctccagctgcccctg
cagttcctgtctcggtgtcccgcctgtttcttcaacttgatgaacctcttctgtgagctg
acatgcagcccccaccaaagtcagttcatgaatgcctctgagatcaacggcaccagtgta
acggaagtgcagtattacgttggacaaagatttgctagcgccatgtataacgcctgtaag
gacgtccaggcaccatccaccaacgtgaaggccatatcaatagtgtgtggcaaagatgca
aaagactgtaacgctactaactggatccagttcatgtttgatatcaacaatggacagtct
cccttccctatcatcccaatattctcagatgtcccggtgtctggttacactcccatgaac
aacaagacatacgcctgcaccgagggcttggaggacggctcaggtccttgctcctgtcag
gactgcaccaacgcctgtgggcccagacccgtacctccccctctccccccaccctggaca
atctttggtatcgatgctatgaccgtcatcatgtggatctcatacgtggccttcctgctg
atctttttcggagctgtactgattgcgtggtgttacaggaaaaggaggatcatgtccgag
tatggccccatactggacagcaataacccgctgtctctcaacagtgataatcctgaccac
gtcaatgcatcatgttgtgaaagtctcggcgaacgcttcgagaatgcactgcgcgtcttc
ttctgctcctggggttccttctgcgtgcgacatccctctgtggtcatactggggagcctg
atagtcgtggtcgcctcctctggtgggctggtctacatgcgcatcaccaccgaccccgtt
gatctgtggtcggctcccaccagccaggctcgtcaagagaaggactactttgacaaacac
tttggccccttcttcagaactgtacagctcattataaccactccaatcaatgacactacc
gtctactccccataccctgccggatcggacgtcccattcaaagccatactggataaagac
atcctgcaccaggtgctggatttgcagcttgacatcgaagccattgtggccccatacaag
gatcaaaccgtcaccctgaaggacatctgcttggcccctctggccccctacaatgacaac
tgtaccatcctgagtgtcctcaacttcttccagaacagccacgctgtgttggaccacacg
aagggagatgaattctttgtctgggctgactatcacagtcacttcctctactgtgtcagt
gcaccagcatcccttaacgacaccaccgccctccacgacccttgtttgggcacgtttggg
ggccccatcttcccatggctcgccctcgggggttacgatgagaccaactacaacaatgcc
accgctctagtgatcacctttccactcaacaactacctgaacgactcagtcaggctggac
aaagctctggcgtgggagaaagaattcatcaagttcatgaagaacttcacaaaccccaac
ctgaccatagcgttcagtgcagagaggagtattgaggatgagattaacagagagagcaac
agtgacatcagcaccatcgtgatcagctacgctattatgttcatctacatctccctggcc
ctgggtcacatccaaagctgcaggagagtgatggtggactcaaagatttctttgggtata
gctggtatcctgattgtgctcagctctgtgtcctcctcactggggatcttcagctatgct
ggtatccctctcaccctcattgtaattgaggtcattcccttcctggtgctggctgtcgga
gtggacaacatctttattatagtgcagacgtaccagagagatgagcggatgccacacgag
gagcttcaccagcagatcggtcgtatccttggtgacgttgccccgagcatgctcctctcc
tcgttctctgagacggtggccttctccctgggagccttgacgaacatgcctgcagtgagg
actttctctctgtttgctggcctggctgtttttattgatttcctgttgcagatcagttgc
tttgtcagcttgctcggcttggacgcagaacgacaggaggggaaccgacttgacatcatc
tgctgcgtgaagctgccagaaggtcaggaaacaaagacggatggtttcctcttccgcttt
ttcaagaaagtctatgccccattcatcctcaaagagtgggtacgaccaatcatagtggca
gtgtttgttggagtactctccttcagtattgctgtcatgaacaaagtggagattggactg
gaccagaaattatccatgcctgatgactcgtacgtgctggactactttaagaacatgagc
gagtatctccacactggcgctccagtgtactttgtggtggaggatggtgtgaactacagt
agcctggagggtcagaatgttgtatgtggtggagtgggctgcaacaacgactctctggtc
cagcaggtctactctgcctcactcatcagcaactacacaaccatagccctcacaccgtcc
tcctggttggacgactacttcgactgggtgaagcctcagtccacttgctgtcgttacatc
aacgccaccggggctttctgcaatgcttcagtggtaaactcatcgtgtgttcactgtcgg
cccatgactccgagtggaaagcagaggccagaaggtgaagacttcatgaagtttctaccc
atgttcctgtcggacaatcccaacgtcaagtgtggaaaaggcggccacgcagcctacggc
acagcggtggacctgtatcccaatgacgcaggcgtgggagccacttactttatgactttc
cacaccatcctgaaggaatccccagacttcataaatggtttgaaaatggcccgaaatctg
gctcataacatcagtcagtccatgaaccacaaagtgtttgcctacagcatcttctacgtt
ttttacgagcagtacctcaccatagcgtacgacacggctctgaacttgagcgtgtcgctg
gcggccatatttgtggtgacggcgattttgttaggcttcgagctgtggtcagcggtggtc
gtctgcatcaccatcgccatgatcctggtcaacatgttcggcgtcatgtggctgtggggc
atcagcctcaacgctgtctccctggtgaacctggtcatgacctgtggtatctcggtggag
ttctgcagtcacatcgtgcgagcgttttccatcagcgtgaagaagaaccgagtggagcgg
gctgaggaggctctggctcacatgggcagttctgtattcagtggaatcacgctcacaaag
tttggaggtatcataatcctggggctgtccaagtcacagatcttcaaggttttctacttc
aggatgtacctggccatagttctgctgggggccacacacggcctcatcttcctccctgtg
ctgctcagctatatcggtccgtcggtgaacaaagcaaaggtgtttgctgctaacaagcgc
aacgccggcacagaaagggagcggctcctcaactactag
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