Hippoglossus hippoglossus (Atlantic halibut): 117777936
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Entry
117777936 CDS
T07778
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04382
Cornified envelope formation
hhip04510
Focal adhesion
hhip04512
ECM-receptor interaction
hhip04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117777936
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117777936
09142 Cell motility
04820 Cytoskeleton in muscle cells
117777936
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117777936
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hhip04147
]
117777936
00536 Glycosaminoglycan binding proteins [BR:
hhip00536
]
117777936
Exosome [BR:
hhip04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117777936
Glycosaminoglycan binding proteins [BR:
hhip00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117777936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117777936
NCBI-ProteinID:
XP_034468932
LinkDB
All DBs
Position
17:complement(13026130..13044267)
Genome browser
AA seq
1669 aa
AA seq
DB search
MRSSLTVVTLCRWILVVFIFVQQLSAGDVEQLCQGRNCSVCRCHPAKGARGSPGKPGEQG
PQGPMGPWGHRGPPGDKGRRGIEGSHGPEGPKGDRGKTGAPGFSGNDGSLGHPGAGGEPG
LPGLDGCNGTMGRPGVPGTHGLDGLNGPLGFPGLKGIKGEPLYGVTLPGLPGERGRDGEH
GLPGGRGVMGPKGHDGFSGPPGPEGSVGREGVRGPPGNPGGSLAGDKGDDGEQGPPGPPG
PEEVIEFPLDFLPLKGYKGDRGLPGPCGPMGNMGDIVDFNRQRNKGEQGILGFLGLPGLP
GIPGIDGQKGPQGFYGEEGLPGLIGRTGPKGYPGDSGLPGPLYLYNGSDARGAKGEHGYQ
GASGIPGDQGYPGMQGPPGPPGLTVSEEPGLPGPPGHPGPKGYKGQPGRYNNFEMNPFPG
PKGTKGLTGLKGGRGLPGRPGCGDYYCEPGVPGDPGDPGFKGSRGQKGREGIKGCQGECE
CRFVVGSVGLPGPPGYPGSPGFPGAQGLIGDPGLKGDEGARGPYGFQGIPGFKGDKGPKG
DSFVASGQGVQGDRGFPGNTGPPGATGRPGKDGLPGPSGDPGPPGYGYAGLPGTKGDPGV
VGPKGFPGIVGTKGPGFPGPTGPPGPKGDHGYPGTPGVTGRPGPPGEIENCCDEEAIGSP
GPKGEPGTPGIPGEPGIHGLQGVPGHLGLKGLRGDDGGTVGVGLPGPPGLNGDPGDPGPY
GIRLDGPPGIPGIPGLPGRKGSTGDILSACPGVIGPAGQPGVIGTKGPRGIPGNPGSPGI
HGRPGQTGHKGEPGVSGDPGATGPPGPSCTVCELDGLPGPPGPPGNPGQRGIPGYLVQKG
LKGDMGPPGHGPKGLIGSPGLPGFPGSPGPSGTIGPSGDTGIDGWPGTKGEIGYPGRAGA
SGLPGRTGPPGPRGKQGEKGFTGQPGDTGDPGLLGNKGLRGLPGLPGPSGRVNMTKGPEG
LSGRRGQPGQQGLGGLKGIRGIPGDSGPEGWPGPPGFKGSVGVPGRVGIPGPPGHPGIKG
FPGPRGYTGHVGDPGDPGPTGNIGIQGIQGLPGAKGEPGKSIGQPGPPGPRGLPGDNRPD
APRRSPGDSGDPGLRGGPGQPGQPGIPGEPGRLGGLGFPGPRGTSGHQGFPGIPGDQGGL
GPTGPTGPSGPQGPPGPPGLDGLDGLRGPKGLKGASGQDIHGPQGLDGFPGVKGLKGHQG
PPGVTFPGPKGLTGPPGDTGLPGFPGEPGYPGTECRTPSPGPHGDVGYEGPSGLPGLPGE
PGPPGTSFSGDRGPTGPPGLTGRKGAMGHQGPPGSHNNPGFIGPKGERGPIGPRGAQGTN
GQQGFPGPRGPKGKTGPAGNRGVRGPPGDSISGLGVAPLGLPGPIGSPGSRGFPGDVGPP
GTPGRKGETGSAGPMGDPGLLGPAGPNGSVGDPGEVGQQGFIGPQGVSGPPGEQGQPGHR
KISRSGHLLVVHSQSVQVPQCPEGSSQLWVGYSLVYLEGQEKAHTQDLGQAGSCLPVFST
MPFSYCNTAACHYASRNDKSYWLSTTAPIPMMPLFGQEISSHISRCAVCETVSPAVAFHS
QDHVVPACPPGWRSLWNGFSFLLHTGEGVNGGGQSLTSSGSCLKDFRTHPFIECQGERGS
CHYFANLYSFWLTTVSETEQFIIPRPGTIKAADKQRRKASQCHVCLRGI
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgagatcctcacttactgtagtgacgctgtgcaggtggatccttgtggtgtttatcttt
gtgcagcagctcagcgcaggggatgttgagcagctgtgtcaaggtagaaactgctctgta
tgtcggtgtcatcccgccaaaggtgcacgggggtctccagggaagccgggggagcaaggc
ccccagggaccaatgggaccttggggacacagagggccacctggagacaaaggcaggagg
ggaatagagggatcacacggccctgaggggcccaaaggagaccgtggcaagactggtgca
cctggtttctctggtaacgacggctctttaggtcaccctggggcaggtggagagcctggt
ttgccaggactggatggctgtaatgggacaatgggtcgacctggagttcctggtactcat
ggtttggacggtctgaacggtccgctgggatttcctggacttaaaggaattaaaggagaa
ccactgtatggtgttacccttcctggacttcctggggagcgtggcagagatggagagcat
ggtttacctggaggacgaggagtcatgggacctaaaggccatgatggcttctctggtcct
cctggacctgagggctcggtaggacgtgaaggtgtcagaggaccaccaggaaaccctgga
ggatcactggcaggtgataaaggcgatgatggtgagcaaggtccacctggccccccagga
ccagaggaagtcattgaatttcctctagactttcttccactcaaaggctacaagggagac
agaggtcttcctggaccatgtggaccaatgggcaacatgggggatatagtagactttaac
agacaaagaaataaaggagagcaaggaatccttggatttcttggacttccgggtcttcct
ggtattcctggtatagatggacaaaagggacctcagggtttctatggagaggaaggactt
ccaggtctcattggaagaactggaccaaagggttacccaggagattcaggtcttcccggt
cccctttacttatataatggaagtgatgccagaggagctaaaggtgaacatggttaccaa
ggggcatctggaatcccaggagaccaggggtacccggggatgcaaggacctcctggccca
ccagggttaacagtatcagaggagccaggccttcctggtccacctgggcaccccggtccg
aagggctacaaaggacaaccagggcgttataacaactttgaaatgaatccgttcccggga
ccaaagggaactaaaggactcactggactcaaaggtggtagaggcctccctggtcggcca
ggatgtggagattactactgtgagcctggtgtcccaggcgaccctggtgacccaggattc
aagggatctcgtggacagaaaggacgcgaaggaattaaagggtgtcaaggggaatgtgaa
tgtaggtttgttgtgggaagcgtaggcctgcctggtccacctggttatccaggatctcca
gggtttcctggagctcaaggactcattggggacccaggtctgaagggagacgagggtgca
agaggaccatatggctttcaaggaattcctggttttaaaggagacaaggggccgaaaggt
gactcttttgtggcaagtggtcaaggtgtccagggtgacagaggatttcctggaaatact
ggtcctcctggagcaacaggtaggccaggaaaggatggcctccctggcccctcaggagac
cctggaccaccaggttatggatatgcaggattacctggtaccaaaggtgaccctggtgtt
gttggacccaaaggttttccagggattgtaggcaccaaaggacctggttttccaggccct
acagggcccccaggacccaaaggagatcatggttatcctggcaccccaggagtaactggc
agaccaggacctccaggtgaaattgaaaattgctgtgatgaagaagcgattggatcacct
ggtccaaagggtgagccaggcaccccaggaattccaggtgagccaggaatacacggtctc
cagggagttccaggacacctaggccttaaaggattgagaggagatgatggtggaactgta
ggggttggactgccaggacctccaggtttaaacggcgatccaggtgaccctggtccctat
gggattaggctggatggccctccaggcattccggggataccaggactcccaggcagaaag
ggttcgacaggagacattctctctgcctgtccgggtgttattggcccagctggccaacct
ggggttattgggacaaaaggacctcgtggcattcctggaaaccctgggtctccaggcata
catggccgacctggacaaacaggccacaaaggagagccaggagtcagtggtgaccctggt
gccactgggcccccaggcccatcctgtactgtatgtgaactggatggactcccaggccct
ccaggccctccagggaaccctggacagagaggaataccaggctaccttgttcagaagggt
ttgaagggagatatgggtccacctggtcatggaccgaagggtcttataggatctcctggc
ctccctggttttccaggctcacctggacccagtggcaccattggcccttcaggagatact
gggattgatggctggccagggacaaaaggtgaaattggctaccctggtagggccggagca
agtggtttaccaggtcgtactggacctccaggacccagaggtaaacagggagaaaaaggc
tttactggtcaaccaggtgacacaggagacccaggactgctgggtaataaaggtttacga
ggtctcccaggattaccaggcccatcaggacgtgtgaatatgactaaaggcccagaaggg
ctttcaggaaggaggggacaaccaggccaacaaggacttggaggcttaaagggtataagg
ggaataccaggtgattcggggcctgagggatggcctggtccaccagggtttaagggcagt
gttggtgttccaggcagggtaggaatcccgggacctcctgggcaccctggaatcaaaggt
ttccctggtccaaggggatatacaggacatgttggagatccgggagatccagggcctaca
gggaatatagggatacaagggatacagggattgcctggtgccaagggtgagccaggaaag
tcaattggacaacctggtccacccggacccagaggactgccaggggataatagacctgat
gcacccaggaggagtccaggtgattcaggtgacccaggactcaggggagggccaggacag
cccggacaaccaggcattcctggggaaccaggaagactcggaggattaggcttccctggg
cctcgtggcacatctggccatcaagggtttccaggaattccaggtgatcaaggaggtctc
ggcccaacaggtccaactggcccaagtgggcctcaagggccccctggaccaccaggtctg
gatggattggatggacttagaggtccaaaagggttgaagggagcaagtggccaagatatc
catggcccgcaaggactagatggttttcctggagtcaaaggtctgaagggccatcaagga
cccccaggagtcacctttcctgggcctaaaggtctgacgggcccacctggtgacacaggt
cttccaggcttccctggcgaacctggataccctggcacagaatgccgcacaccttcacca
ggaccccatggagatgtaggatatgaaggaccttcaggactcccaggtcttccaggggaa
ccaggtcctccaggcacatccttcagtggagaccgaggaccaactggccccccagggtta
acaggtcgtaagggagccatgggccaccaagggcctcctggatctcacaacaatccaggc
tttatcggtccaaaaggtgagagaggtcccattggtcccaggggtgctcaaggaaccaat
ggtcagcaaggtttccctgggccacggggccctaagggaaaaactggtccagctggaaat
aggggtgtcagaggacctcctggtgattccatcagtggactaggggtggctcctctcgga
cttccaggaccaattggttcccccggatctcggggattccctggtgatgtgggtcctcct
gggactccaggacgtaaaggagagacgggttctgcagggcccatgggtgaccctggttta
ctgggtcctgctggtcctaatggctctgttggagacccaggtgaagtcggtcagcaagga
ttcattggaccacaaggtgtttcaggcccacctggtgaacaaggtcaaccaggtcacagg
aagatatccaggtcaggccacctcttggttgtccacagccagtcagtgcaggtgccacag
tgccctgaaggcagcagtcagctttgggtgggctacagtctggtgtacctagagggacaa
gagaaggctcacacacaagacctgggccaggctggctcctgcctccctgttttctctacc
atgcctttctcctactgcaacacagctgcctgtcactacgccagccgcaatgacaaatcc
tattggctctccaccactgctcccatacccatgatgccactgttcggccaggagattagc
tcccacatcagccgctgtgccgtgtgtgagacggtgtcacctgcagtggctttccatagc
caggatcacgtggttcctgcatgcccgcctggctggaggagtctgtggaacggcttctct
ttcctcctgcacacaggggaaggtgttaatggcggtggccagtctctgacctcctccggc
agctgcctcaaggatttcagaactcaccccttcatagaatgccagggcgagcgaggctcc
tgtcactacttcgccaacctctacagcttttggctgactactgtgagtgagacagagcag
ttcatcatcccgagacccggcaccatcaaagcagccgacaaacagcgacgcaaggccagc
cagtgtcatgtctgcctcagaggcatataa
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