Hippoglossus hippoglossus (Atlantic halibut): 117777940
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Entry
117777940 CDS
T07778
Symbol
rc3h1b
Name
(RefSeq) roquin-1b isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hhip03000
]
117777940 (rc3h1b)
04121 Ubiquitin system [BR:
hhip04121
]
117777940 (rc3h1b)
Transcription factors [BR:
hhip03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117777940 (rc3h1b)
Ubiquitin system [BR:
hhip04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117777940 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
117777940
NCBI-ProteinID:
XP_034468938
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All DBs
Position
17:complement(13132711..13148069)
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AA seq
1135 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSILSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPGSFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLDKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLATRLPGPGGLMPDDGLPLDVAVTRKPS
PLPNGSVAPSLPQLIARSTDAVPYELLRKPIKMDGGIPSAPGSPPDIMDPGPKPCMPLPP
HVMSHSRMPADHLSGVKHMPVVPRSSPVYSQQQVPEMCYDSRPPPSASQYDPPQYPTGYP
YQQPPQYVPRDYIRNPPPPSESGPPYQDPYPGYGPPERPYQAPHSGQNFSYPHPPQYDRG
RHGHYPGPPPPPQPYPSQRDNLIRMSPAPHDVPPPSAGQAGSLYHQEPTARDRYPPDGYY
PPGAQAPPMRAYVRGPSYSGQQPSLDYLHRRRQELLSQLEERKVISPPPFAASPALSHPF
PSDYPPEYGEENSKTIGKCREPDYAGQYSPWSCETIGSYIGTKDAKPKDVMVSGTMEIMN
VEAKGLRDPSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTTKTGYQTVGPVQAMAS
TPQNPNSKHMTMPAEYSYGSHGGWGGASYPSHQTGSSSQGHFSERMPMAATDREQLKIEL
QQVNQQINQQTQMHSMEAANNSLLLQREASALAGQSVQPCQSQSAAAAQQQQAKWPAGGA
AGSAISSEQLSMELHQVEREIGKRTREMAMENQVAHDVQQYKMKPTENGQPEHKTLEEIS
LALGEVSNGSSSLQESAVGGSMLSLTNKTSGLSLCSDPGSTGSEMQKNGVVHSCS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacggagttcctgctgtgcccgatctgcacacagaca
tttgaggagactgttcgtcggcccatcagcttgggttgtggacacactgtctgcaagatg
tgcctgaacaagttgcaccgtaaggcctgtccctttgaccagacagccatcagcacagac
atcgagcagctgcctgtcaacacagccctgttgcaactggttggaggccaggttcctaag
gctcaaccagttgccttgattaccagtccagaggactcgcagcattatgaggaggccagg
cagtgtgtggaggagctggccctttatctcaaacccctcagcaacaccagaggtgtgggt
ctgagcagcacggcccagagcatcctgagtcgacccatgcagaggaaactggtaactctg
gtccactgccaactggtggaagaggagggccgtgtcagagccatgagagctgcccgctct
cttggtgagcgaactgtcaccgaactcatcttgcagcaccagaatccacagcagctctcc
tccaacctgtgggccgctgtccgtgcacggggatgtcagtttcttggcccagcaatgcaa
gaggaagctctgaagttggttcttcttgctttagaggatggttctgctctgtccaggaag
gtgttagttctctttgtagtccagaggcttgaaccacgcttcccacaggcctctaaaact
agtatagggcatgtggtgcaactcctctacagggcctcctgcttcaaggtgaccaaacgc
gatgaagattcatccctgatgcagcttaaagaagagttccgtacttatgaggctctgcgg
cgcgagcacgactctcagattgttcagattgccatggagggagggctgcggattgcacct
gaccagtggtcctctctgttatatggagatcagtctcacaagtcacacatgcaatctatt
atagataagctgcagacacctggatcttttgctcaaagtgtccaggagctgacgattgcg
ctgcagaggactggtgacccagccaacctcaacaggctgcgaccccacctggaactactg
gccaacatcgaccccagtcctgatgccccccctcctacatgggagcagctcgacaagggg
ttggtagcagtgaagacagtggtgcatggcctggtggacttcatccagaaccacagcaag
aaaggagctgatcctcaacagcctcctcagcacagcaagtacaagacatacatgtgtcgt
gacatgaagcagaaaggaggctgtccccgtggagccagctgcacctttgctcactctcag
gaagaactggagaagtatcgtaagatgaacaagcgtctggccacacgcctcccgggccca
ggagggctcatgccagatgatggcctccctcttgatgtagcagtgacccggaagccttcc
cccctccccaatggcagcgttgcaccctctttgccacagctcatcgctcgcagcactgac
gcagtcccatatgaactgttgcgtaaacccatcaagatggatggcgggattcccagtgcg
cctggatcaccacctgatatcatggaccctgggcccaaaccttgtatgcctctgccacct
catgtcatgtcccattcaaggatgccagcagaccacctttctggggtgaagcacatgcct
gtggtacctagaagttctccagtatactctcagcagcaggtccctgagatgtgctatgac
agccgcccaccaccctctgcttctcagtatgaccccccgcagtaccccacagggtacccc
taccagcaaccaccacaatatgttcctcgggattacatccgtaaccctcctccccctagt
gagtcaggacccccttaccaggacccctaccctggctatggccctccagagcgcccctat
caggcccctcactctggccaaaacttctcctaccctcaccctccacagtatgatcgtggt
cgccatggtcactaccctggtccaccacctcccccacagccttacccatcgcagagggat
aacctgatcaggatgagtcctgcccctcacgatgttcctccgccatcagctggacaggca
ggttcactttaccaccaggagcccactgcccgggatagatacccaccagatggctattat
ccaccaggtgcccaggctccacccatgagggcttatgtcaggggaccatcatatagtggt
caacagccaagcctggactatctgcaccgacgtcgacaggagttgttatcccagctggag
gaaaggaaggtcatctcccctccaccgtttgctgcttctcccgctctttctcatcccttc
cccagcgactaccctcctgagtatggtgaagagaactccaaaaccattgggaaatgcaga
gagcctgactacgcagggcagtactctccctggtcttgtgaaaccattggctcctacatt
ggcacaaaggatgccaaacccaaagatgttatggtttctggtaccatggagataatgaac
gtggaggctaagggtctgagggatccatcgctagaggctcctcggaggggtgcagaagtc
aaggacgatgaccccatcatcccatttggtcctcagcccactgtgtcacgttttggtgcc
atctcccgcaccacgaagacgggctaccagaccgtgggccctgtacaggctatggcctcc
actccccagaacccgaactctaaacatatgaccatgccagcagaatactcgtatggaagc
catggaggatggggtggagcttcttacccctcccaccagactggctcctcctctcaggga
cacttcagtgagcgcatgcctatggcagccacagacagagagcagttaaaaatcgagctg
cagcaggtcaaccagcagatcaaccaacagacccagatgcacagcatggaggctgccaat
aactctttactgctgcagagggaggccagtgcattggcaggtcagtctgtacagccctgc
cagagccagtctgcagcggcagctcagcagcaacaggccaagtggccagcagggggagca
gctggatcagctatctccagtgaacagctaagcatggagctccaccaggtggagagagag
atcggcaaaaggacccgagagatggctatggaaaaccaggtggcacatgatgttcagcag
tacaagatgaaacctacagagaatggacaaccagagcacaagactctggaagaaatctcc
ctggctcttggcgaggtgtcgaacggctccagcagtctgcaagaaagtgcagtaggcggg
tccatgctgtcactgaccaacaagacgtcgggtctgagcctgtgctcggacccaggttcc
acaggttcagagatgcagaagaatggcgtcgtccattcctgctcttag
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