Hippoglossus hippoglossus (Atlantic halibut): 117778017
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Entry
117778017 CDS
T07778
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117778017 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hhip01009
]
117778017 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117778017 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
hhip03029
]
117778017 (rb1cc1)
Protein phosphatases and associated proteins [BR:
hhip01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117778017 (rb1cc1)
Membrane trafficking [BR:
hhip04131
]
Autophagy
Autophagosome formation proteins
ULK complex
117778017 (rb1cc1)
Mitochondrial biogenesis [BR:
hhip03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
117778017 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
117778017
NCBI-ProteinID:
XP_034469083
LinkDB
All DBs
Position
17:complement(16147868..16161936)
Genome browser
AA seq
1657 aa
AA seq
DB search
MKLYVFQVNNGCTLTFDTDLAVQTVLELKHAIQAKYKIATQHQVLVVNGGECMAAERRVC
SYSAGTETNPIFLFNKEMILCDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLVKFDAAYSNYQH
ELEEIKVKLTKLGTAVAVMARIPLLESLTRHSYRESMEKSSPTPGKDSDGTEEEKSSESV
RYTAEAKRPSKLSASFSASQAATCKPTGDHETNEMTDRGGLRAALLDDDDDDDDDDDDSD
DDDDDDTPEFANPSSFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRVIQPFLTDCR
DTIGKLDNQNMKAIKGLEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSV
LPDLCLSHTNQLMIMLNNHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDSEK
LQALLRLLTELLERVRVVEALSTVPQMYCLAVVEVVRRKMFMRHYREWAYALVKDGKRLY
EAEKFKRESFGKLFRKSFLRNRLFRGLDSWPPTSFCTRKPRRFDDELPDISLEDLQYLKS
CCPLEVQPFLIHSPYFFRVPTMCDFEPLNRHVETLHQLVQAAQSVDEMSQTITDLLNEQR
ASYCHSSHRSTMQTPQSESIPGSTTPGSSKTPTSLGLQGPGCQPLHVPVPAPLEDLSPDS
IDAQTFDFETIGHPNMDPVLQQGSLDLDSLVESPESDFMSAVNEFVIEGNLTSPNPISDP
TSPDMMVESLYSSVINAIDNKRMQDTTTLERENFRITVLKQVIEKYQSAAEESHSNLRSV
KDDLHHLRGLVLKEQHDFGFDLRDMTTEVRNVVDNFCLTHELKLKEQHQSELLSVRQELE
KQIQTLTEENQVNQNIVRDVQRAMLELEGLMERKEKELTQLENERERWMETERGQTDRIK
NLEQLISDQAEEIKTLSAARDSLTSQLENLHFEIERGQQKIRQELEAVEQAHLKELEVRM
KQEHKAQLETLTQENKEALEHLASENSTNLSEAADQHATALGEKENQIKDLEARITELAE
LRCKLEVELALKESETEEVRLLFEEAKTQQAEAVKSQVEAETIVLGKELADVKKQLQVKN
EEYEVGLAELRSLMRNEKDHCISELVDRHEEETILLHNELSSLQKQSQDAETNHSEQQQK
LKQELEQQVTQSEEKEKQFTSFQELEQELRTLVNKLQTENDMLSQKVEQDRRATETELEK
QESTKVASPEAFKELEQQKEEMENRLLKKIKKLESELHERRSSKSDEGSPLRAEEIADAA
APLSLDSALQERLQQERASLLSQIELLEKKKNEEIQNLKTSLIAESQTNFNTVLTREKLK
KEQIIHDLTEKLHNVTQQQEKDKALIESLSEDRASVIQEKKHLEEELNRLRSTALVSSAF
FTPHPSALEVTEAGASGALGASAAGAAAARALHVAGYCSSEPMAETDRLACVAAIRDDEN
VDSAVEASMVTVHDNILMSEEKQRILLLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSD
KIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSESLTALDLKPASGTSRRPWVLG
KVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNRKV
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggctgcacgctgacatttgacactgacctt
gctgtccaaactgtactggagcttaaacatgccatccaagccaaatataagattgcaact
caacatcaagtccttgttgtcaatggcggggaatgtatggctgcagagagacgggtctgc
agctacagtgctggcactgaaacaaatcccatattcttgttcaacaaagagatgatcttg
tgtgaccgggatccaacgatcccaaaaaccaccttctcgattgagagtgagattcaggtc
aaggtggaggagtctctactgatgccagctgtttttcacactgttgcctcacgaacacaa
cttgctctggaaatgtttgaagttgccaagaaactttgctctttctgtgaacgtttggtt
catgatgaacatcttcaacaccaaggctgggctgctatcatggctaatctggacgactgc
actctgtcttatcagaagttgcttgtaaagtttgacgctgcatactcaaattatcaacat
gagttggaagaaattaaggtgaaacttacaaagttagggacagcggtagctgtaatggct
aggatacctctgctggaaagtttgacaagacacagttacagagagagcatggagaagtcc
agtccaaccccaggaaaggattcagacgggacagaagaagaaaagtcctctgagtctgtg
cgctacactgctgaggcaaagaggccctccaagttatcagcatccttctctgcttcacaa
gcggccacatgtaagccaaccggtgaccatgaaacaaatgaaatgactgacaggggtggg
ctgagagctgcgctattagatgatgatgatgatgatgacgacgacgatgatgacagcgac
gatgatgacgatgacgacactccagagtttgccaacccgtcctccttcaatgtcacacta
ttagactggatcaacgtgcaagacagacccaatgatgtggaatcagttgtgaggaaatgc
tttgactccatcaataggcttgacccacgggtcattcaacccttcctgacagattgtcgt
gacactattggtaagttggataatcaaaacatgaaagccatcaaggggcttgaggacagg
ttgtatgctcttgaccaaatgattgcaagctgtaagaagttggtgaacgaacaaaaggaa
ctcgctcagggatttttggccaatcagaagcgtgctgaaaacctgaaggatacatctgtt
ctgcccgacttgtgtctgagtcacaccaaccagctgatgatcatgctgaacaaccacagg
aagctgctcgacatcaaaaagaagtgcactactgccaaacaagaacttgcaaacaacctt
caagtcagactcaaatggtgctgctacgtgatgcttcatgcagaccaggacagtgagaag
cttcaggctctactcagactcctgacagagctattggaacgagtgagagtggtggaggcc
ctcagtactgtgccccagatgtactgcttggcggtggtggaagtcgtcaggaggaaaatg
tttatgcgccactacagagagtgggcttatgcacttgtgaaagatggcaaacgactgtac
gaggccgagaaattcaaaagggaatccttcgggaaactctttaggaagtctttcctcaga
aatcgtttgtttagaggactcgattcatggcctcccacatcattctgtacacgaaagccg
agaaggtttgacgatgaacttccagacatttcacttgaggacctgcagtacttgaaatct
tgttgtcctttggaggtgcaacctttccttattcattccccatattttttcagggttcct
acaatgtgtgactttgagcccttaaatcgtcacgtagagacgcttcaccagctggttcaa
gcagcgcagagcgtggatgagatgtcccaaactatcactgacctgttgaacgaacaaagg
gcatcctattgtcatagctctcacagatcaaccatgcagaccccacagtctgaaagtata
cctgggagcaccacaccggggtcctccaaaacccccacctctcttggccttcagggtcca
ggctgccaacccctacacgttcctgtcccagctcctttggaggacttgtccccagacagc
attgatgcacaaacgtttgactttgaaaccatcggccatccgaacatggacccagtcctg
cagcagggctccctcgacctggattctctagtagagagcccagagtctgatttcatgtct
gctgtcaatgagtttgtgattgaagggaacttgacctccccgaaccccatcagtgacccc
actagtcctgatatgatggtagagtctctgtactcttcagtgatcaacgccatcgataat
aagcgtatgcaggacaccacaacactagagagggagaattttaggatcactgtcctcaaa
caagttattgagaagtatcagtctgctgcagaggagtcccattccaacttaagaagtgta
aaggatgatctccatcacttacggggtctagtgttaaaagaacaacatgactttggcttt
gacctgagggatatgaccacagaggtgcgcaacgttgtggacaacttctgcctgacccat
gaactgaagttgaaggagcagcatcaaagtgagctgctctctgttcggcaagagcttgag
aagcagattcagacactaacggaggaaaaccaagtaaaccagaacattgtgagagacgtc
cagcgtgcgatgctcgagctggagggccttatggagcgcaaggagaaagaacttactcag
ctcgagaatgagagagagcgatggatggaaacggagagaggccagacggataggatcaaa
aatctggagcagttgatcagtgatcaagctgaagagatcaagacgctttccgccgcaaga
gactccctgaccagccagcttgagaatctgcactttgagattgaacgtggccagcagaag
attcgacaggagttggaagctgtggagcaagctcacttaaaggagctggaggtcagaatg
aagcaggagcacaaggcacagctggagactcttacccaagagaataaggaggctctggaa
catctggcttctgaaaacagtacaaatttaagtgaggcagctgatcaacatgccactgct
cttggagagaaagaaaaccaaatcaaggacttggaggctcgtataactgagcttgctgaa
ctccgttgcaaactcgaggtggagttggccctcaaagagtcagagactgaggaggtgaga
ctcttatttgaggaggccaagactcagcaggccgaggctgtgaagtctcaggttgaagct
gagaccattgtcctcggcaaagagctggcagacgtcaaaaagcagcttcaggtaaaaaac
gaggagtatgaagtgggcctggcagagctcaggagtctcatgaggaatgagaaggaccac
tgcatctccgagctggtggacagacacgaggaggaaactatcttgttgcacaatgagctc
tcctccctgcagaagcagtcccaggatgctgagacaaaccattcggagcagcaacagaaa
cttaagcaggaattagagcagcaagtgactcaaagtgaagaaaaagaaaagcagttcacg
agcttccaagaactggagcaagagctgaggactctcgtcaacaaactacagacagaaaac
gatatgctctcccaaaaagtagagcaggacagacgagccactgagacagaactcgaaaaa
caagagtccaccaaggttgcatcaccagaagcctttaaagagttggagcagcagaaggag
gagatggaaaacagactgttaaagaaaatcaaaaaacttgagagtgagcttcatgagaga
cgatcttcaaaaagtgatgaaggctcgccgctgcgcgccgaggaaatcgcagatgccgca
gcgcctctgtctctggactctgcactacaagagcggctgcagcaggagagggcctcgctg
ctgtcccagatcgagctcctggagaagaagaagaatgaggagatacagaacctcaagaca
tcactaatcgcagaatcgcagactaacttcaacactgttctaacccgagagaagctgaag
aaggagcagatcatccatgacctcacagagaagctgcacaatgtgacccaacagcaggag
aaggacaaagctctgatcgagtctctctctgaggaccgggcgagtgtcattcaggagaag
aaacacttggaagaagagcttaatcgcctgcgcagcactgcactggtctcctctgccttc
ttcacccctcacccatcagctctggaggtcacagaggcgggagcatcaggagcactagga
gcatcagcagcaggagcagcagcagccagagctctgcatgttgctgggtactgctcctct
gagcccatggctgaaactgacagactggcctgtgtagcagccatacgagatgacgaaaat
gtcgactcagcggtggaagccagcatggtgacagtccatgataatatcctgatgtcagag
gagaaacagcggatactcctactcgagcggactttacacatgaaggaagaagaaaacaag
cgcctcagtcaaagactgatgtctcagagcatgtcgtctgtgtcctcacggcattcagac
aaaatcgccatcagagacttccaggttggtgatttggttctaatcatcctggatgaaaga
cacgacaactatgtgctgttcacggtcggacccaccctctacttcctccactcggagtct
ctcactgcactggacctcaaaccagcttcagggacttcaagacggccgtgggttcttgga
aaagtgatggaaaaggaatattgccaggcaaaaaaggcccagaacaggttcaaggtccct
ttaggaaccaagttctacagagtgaaagctgttccatggaacagaaaagtataa
DBGET
integrated database retrieval system
