Hippoglossus hippoglossus (Atlantic halibut): 117778241
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Entry
117778241 CDS
T07778
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hhip03036
]
117778241 (hfm1)
Enzymes [BR:
hhip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117778241 (hfm1)
Chromosome and associated proteins [BR:
hhip03036
]
Eukaryotic type
Meiosis-specific proteins
Others
117778241 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
ResIII
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
117778241
NCBI-ProteinID:
XP_034469557
LinkDB
All DBs
Position
17:9436267..9451066
Genome browser
AA seq
1559 aa
AA seq
DB search
MLDSSDCPLSLDNLFFEKPIVHKVKPLHQETSPWHLDVPPSLSQIPATHDMQEEAESLPT
RYSFSVKPVPASRSLPPFKVTAGLKVLSQINSSYGFNHDEKEFEETQCGSNSNSISRCDG
LWGGEGFRDYSQGACQSGRGGDETLQDSGHVAVSRRCFSLDCSKSPLLRRSLFKVQVSNS
GGDSSHTDDLSIRGSSSQTASRPQTFLSQVAMATVPPPLQPPWATVCKAAPPFPPKPLFS
PPLLGSSAASGRPPQQATHSEMPDRATKRAFVPPMTPQPLCIQGSSGSELLRPVSEIPSK
FRSVFSEFPFFNYVQSKALDDVLYTGKNFVACAPTGSGKTVLFELAIIRMLMGTSEPWRD
VKAVYIAPIKALCSQCFESWRKKFGPLGVICKELTGDTEIDDFFEIQDSHIILTTPEKWD
SMTRKWKDNCLLQLVRLLLIDEVHVVKDKTRGATLEVVVSRMKAVNTYRTAQNPESGLSI
RFMAVSATIPNISDIADWLSNESGPATYLEMDESHRPVKLRRVVLGFPCNQNQTEFKFDL
SLNYKMANIIQTYSDQKPALVFCSTRKGAQQSAAVLAKDARFIMSIEHKQRLLKYANSIL
DSKLRELVMFGVGFHHAGVELSDRKLIEEAFTLGDLPVLFTTRTLAMGVNLPAHLVVIKS
TMQYVAGSCEECSEADLLQMIGRAGRPQFDTSATAVIMTKVQTRDKYMKLMNGMEIIESS
LHGHLVEHLNAEIVLQTISDVNMALDWIRSTFLYIRALKNPAHYGFSAGLDRHGIEAKLQ
ALCLKNLTSLSSIGLIDMDEDINIKPTEAGRLMARYCVAFDTMTQFCKVAGTENLSDLIE
LLSKSREFSDIQLRVNEKRPLNTLNRDKNRITIRFPIEGKIKTSEMKVNCLIQAQLGSIS
IQEFGLTQDTAKIFRNGMRISKCLTEFLSQRSKAGFSALLNSLILAKCFRSKLWENSPYV
SRQMEKIGQTLSTAMVNAGLTTLSKIEQINPRELELILNRHPPFGNQIRESVINLPKYEV
TLEQLPRYSCATAEIVVKVNLKNQAQLLSRRTAPDHHYVSMIIGDSDNNVVSIQKLTDLV
LLRCGSWSKKIEVAKASKGEEISVNLISSEYVGFDIQQKFNVYFSGARSFGTDNPCHISY
DPTGHRAQHSALKPQSADPATHQRENTTSVTDRDSGNKRQCNHFCKNKDLCGHDCCKVGV
NVAKKRSTNQEYGFSSHLKDLRSRCDTLPQTPVKRLKMKMSEESVSVNMQSFAYKPKESL
PTVSWYGVNDYGASERPHTETVDLTGEDRTELTDTIHLDDFDSDYNDYVGDMYMEETVRT
PAASHTHNQSSSVWMNPGTSVWSQNSKLHLNRTNTTTSAHSERPTAVTSQGSYCETALSA
QIPTVTFDLGNEWDDFDDEHLVHASETSFASCTTNAKPQTQQPVECNTPGFGATSAPPLF
FSPSQVKPCTTPAKTPLRLISPNLSSEIRKPGPSLVTVRPQNRVTLDFNKKRPGIFSEEI
RVKTPENLPKQKQSAPETRRFDFFSTVRVQTNTSTSSSINRSINSQEEEAYIGIFDGIF
NT seq
4680 nt
NT seq
+upstream
nt +downstream
nt
atgttggactccagtgactgccccttgtccctggacaatctgttttttgagaaacccatt
gtccacaaagtaaagcctctgcaccaggagacaagtccatggcacctggatgtgcctcca
tccctttctcagattccagctacgcatgatatgcaggaggaggcagagtcactccctacc
cgatacagtttctcagtgaaacctgttccggcctcaaggtcccttcctccttttaaagta
acagctggccttaaagtcttatcacaaatcaacagctcttatggtttcaaccatgacgaa
aaagagtttgaggagactcagtgtggcagcaacagtaacagcatcagcagatgtgatggc
ctttggggaggtgaagggttcagggattactctcagggtgcctgtcagagtggcagaggt
ggagatgaaaccctgcaggactctggtcatgtggccgtcagcaggaggtgtttttctctg
gactgcagcaaaagcccacttctacggagaagcttgttcaaggttcaggtgtcgaacagt
ggaggtgactcgtcacacacagacgacctcagtatccgcggcagcagcagccagacagct
tccagacctcaaacttttctcagtcaggttgccatggcgacagtacctcctcctcttcag
ccgccatgggcgacagtttgcaaagcagctcctcctttccctccaaagcccctcttttca
ccccctctcctgggctcatctgcagcaagtggccgacccccacagcaggcaacacactca
gagatgccggacagggccacaaagagagccttcgttccgcccatgacgcctcagccgctc
tgcatacaaggttcttctgggtctgaacttttgcgacctgtctctgaaatcccatcaaag
ttcagatccgtcttcagcgaattcccatttttcaactacgttcagtccaaagcgctggat
gacgttctttacacaggtaaaaactttgtggcatgtgcacccactggatctggtaagaca
gtgctgtttgagctggcaatcatccgcatgctaatggggacgtcagagccctggagagat
gtcaaagctgtctatattgcacccatcaaagctctgtgcagtcagtgcttcgagagctgg
aggaagaagtttggtcctctgggtgtgatctgtaaggagcttacaggcgacacagagatt
gatgacttctttgagattcaggactcacacatcatcctgaccacgcccgaaaaatgggac
agcatgacaagaaaatggaaggataactgtctgctgcagctcgtcaggctcctccttatc
gatgaggtgcatgtggtgaaagataagacccgtggtgccacgttggaagtggtggtgagc
aggatgaaggcagtgaacacatacaggacagctcagaatccagagtcgggcctctcaatc
aggtttatggctgtttcagccaccatacccaacatatctgatatagcagactggctgtcg
aatgagagcggtccagccacatatctggaaatggatgaaagccatcgtccagtgaagctc
aggagggtggtgctgggattcccctgcaaccaaaaccaaacagagtttaagtttgatctg
tcactcaactacaagatggccaacatcattcagacttactctgaccagaagcctgcttta
gtgttttgctctaccaggaaaggagcccagcagtcagctgcagttctggccaaggacgct
cggttcatcatgagcattgagcacaagcagaggttgttaaaatatgcaaactctattctg
gattccaaactgagagaactggtgatgtttggagttggtttccaccatgcaggagttgaa
ctgtctgacaggaagttgatagaagaggccttcactctgggagacctgcctgtcctcttt
accaccaggactctggccatgggggtgaacctgccagctcatctggtggtgatcaaatcc
accatgcagtacgttgcaggctcctgtgaagagtgcagcgaggctgacctgctgcagatg
ataggccgagctggaagaccacagtttgacacatcagcgactgcagtgatcatgaccaaa
gttcagaccagagacaagtatatgaagcttatgaatgggatggaaatcattgagagcagc
ctacacggtcacctggtggagcacctgaatgctgagattgttctccaaaccatcagtgat
gtcaacatggctctcgactggatacgctccaccttcctctacatccgagccctcaagaac
cccgcgcactacgggttttctgccggcttagacagacatggaattgaagcaaaattgcaa
gctctgtgcctgaagaacctcacctctctgtcctccatcggtctgattgacatggatgaa
gatatcaatatcaaaccaacagaggccggcaggttgatggcgaggtactgtgttgctttt
gacactatgacacagttctgcaaagtggctggcaccgagaacctgtctgacctgatcgag
ctgttgtcaaagagcagagagttcagtgacattcagttgagagtgaatgagaagaggccc
ctgaacactttgaacagggacaagaacaggatcaccatcaggtttcccattgagggaaag
atcaaaaccagtgagatgaaagtgaactgcttgattcaggctcagcttggttctatttca
attcaagagtttggactcacacaggacacagcaaagatcttcaggaatgggatgcgtatc
agcaaatgtctgacagagtttctgagtcagcgatctaaagcaggtttctctgctctgctc
aactccctgattctggccaagtgcttcagatcaaagctttgggagaactcgccctatgtt
tccagacagatggagaagataggtcagactctgtcgactgccatggtgaacgctggactc
accactttgagcaaaatcgagcaaatcaacccaagagagcttgagctgattctcaacaga
catccaccatttggaaaccagatcagagaatctgtcataaatcttccaaagtatgaagtt
actttggagcagcttcccagatacagctgtgctacagcagagattgtggtgaaggtgaac
ctaaaaaaccaggcacagctgctgtccaggagaacagctccagaccaccactacgtctca
atgatcatcggagactctgacaacaatgtggtctccatacagaaactcacggacttggtg
ctgttgcggtgcggtagctggtcgaagaagattgaggtggcaaaggcctcgaaaggagag
gagatcagtgtcaatctcatcagctcagaatatgtgggcttcgacatccagcagaagttc
aacgtgtacttctctggagccaggagctttggtactgataatccatgtcacatatcgtat
gatcctacgggacacagagcgcagcactctgctctgaaaccacagtcagctgatccggct
acacatcagagggaaaataccacatctgtgacagaccgagactcaggcaacaaaagacag
tgcaaccacttctgcaagaataaggatctctgtggccacgactgctgtaaagtaggagta
aatgtggcaaagaagaggtcaacaaatcaagaatatggtttctcttcccatttgaaagac
ctcaggagcagatgtgacacactgccacagactcctgtcaaacgactcaagatgaaaatg
agtgaggagtctgtgtctgtcaacatgcagagctttgcttacaaacccaaagagagcctt
ccaaccgtttcctggtatggagtaaatgactatggagcctcagagagacctcacactgag
accgtggatctgacaggagaagaccgcactgaactcacagacacgattcatctggacgat
tttgacagtgattataacgactacgttggggacatgtacatggaagagacagtccgaacc
cctgctgcatctcatacccacaatcaaagttcctcagtgtggatgaacccaggaacaagt
gtttggagtcagaactctaaactgcatctaaaccggaccaatacaaccacctcagctcat
tctgagaggcccactgcggtaacaagccaaggctcatactgtgaaactgctttatccgca
caaataccaactgtcacctttgacctcggaaatgaatgggacgactttgatgatgagcac
ttggtgcatgccagcgagacgtcatttgcttcgtgcacaactaatgctaaacctcaaacc
cagcagcctgttgagtgcaacacgccaggctttggggctacatcagcacctccactcttc
ttcagtccctcacaagtcaaaccctgtacaacccctgccaagacaccactgagattgatt
tcacccaatctaagttctgaaatcagaaaaccaggaccctcactagtcacagtcaggcca
cagaatcgagtcacacttgactttaataaaaagagaccaggcatcttcagtgaagagatc
cgagtaaaaacaccggaaaatctcccaaaacagaagcagtcggccccggagaccagaagg
tttgatttcttctcaacagtgagagtccaaaccaacaccagcaccagctcatctatcaac
agaagcatcaacagccaagaggaggaagcttacattgggatatttgatggcatattttag
DBGET
integrated database retrieval system
