Hippoglossus hippoglossus (Atlantic halibut): 117778399
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Entry
117778399 CDS
T07778
Symbol
copb2
Name
(RefSeq) coatomer subunit beta' isoform X1
KO
K17302
coatomer subunit beta'
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hhip04131
]
117778399 (copb2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hhip04147
]
117778399 (copb2)
Membrane trafficking [BR:
hhip04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
117778399 (copb2)
Exosome [BR:
hhip04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
117778399 (copb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
Beta-prop_LRRK2
Beta-prop_WDR19_1st
Beta-prop_Vps41
HEAT_GCN1
Importin_rep_6
Motif
Other DBs
NCBI-GeneID:
117778399
NCBI-ProteinID:
XP_034469799
LinkDB
All DBs
Position
17:10565785..10572568
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AA seq
960 aa
AA seq
DB search
MPLRLDIKRRLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWEKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRQVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVSGLRGSNNVALGYDEGSIIIKVG
REEPAMSMDTNGKIIWAKHSEIQQANLKAMGEAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSVVKLFKNFKD
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELVRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYLADKVASSHENNEGVTEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLLLLATASGNATMVGKLAEGAE
RDGKNNVAFMTYFLQGKLDQCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRENLAKV
NQKAAESLADPTEYENLFPGLKEAFAAEYYLRETCLGTSRPATDYPLVTPNEDRNILEEA
VGYEPKGTFIPTKTQDPEKKKKEEEKEEKKKEEDEEEEEEEEKLLSSMAEFSVAAAAAAP
EATLQPEPADPTAVEEQEEEIPEFSLKDKTLDELDVDLDNMELDDIDTTDVNLDDDFLDD
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgaggctggacattaagcggcggctgacagccaggtcagaccgggtgaagagt
gtggacctccaccccactgagccatggatgctggccagcctctacaacggcagcgtctgt
gtgtggaaccacgaaacacagactctcgtgaagactttcgaagtgtgtgaccttcctgtc
agagcttctaagtttgtggcaaggaagaactgggtcatcacaggagcggatgacatgcag
atccgtgtgttcaactacaacaccttggagcgggtccacatgtttgaggcccactctgac
tacatccgttgcatcgctgtccatccgacccagccatacatccttaccagcagtgatgac
atgttgatcaagctgtgggactgggagaagaagtggtcctgcagtcaggtgtttgagggt
cacactcactatgtcatgcagattgttattaaccccaaggataataatcagtttgccagt
gcctccctggacaggacgattaaggtgtggcagcttggttcttcatctcctaatttcact
ttggagggccatgagaaaggagtcaattgtattgattactacagtggaggagacaagccc
tacctcatctcaggggctgatgatcgccaagtcaagatctgggactaccagaacaagacc
tgtgttcaaactctggagggccacgcccagaacgtctcctgtgtcagcttccacccagag
ctgcccatcatcatcactggatcagaggatggtacggtgcgtatctggcactcgagcact
taccgtctggagagtacactgaactacggcatggagagagtgtggtgtgtaagtggcctc
aggggctccaacaatgtggcgctgggctacgacgaaggcagcatcattattaaggtgggt
cgtgaggaaccagccatgtctatggacacaaatggcaaaatcatctgggccaaacacagt
gaaatacagcaggcaaatctgaaggccatgggtgaggctgaaatcaaggatggagaaagg
ctgccactagctgtcaaagacatgggcagttgtgagatttaccctcaaaccatccagcat
aaccctaatggaaggttcgttgtggtttgcggagatggagagtacatcatttacactgcc
atggctttgaggaacaagagcttcggttcagctcaggagtttgcctgggctcatgactcc
tctgagtatgccatcagagaaagcaacagtgtcgtcaaactcttcaaaaatttcaaggac
aaaaaatcttttaagcctgactttggagcggaagggatctatggaggcttcttgcttggg
gtgaggtcagtgaatggcctggcgttttacgactgggagaacacggagctggtccgccgc
attgagatccagcctaaacacatcttctggtcagactctggggagctggtttgcattgct
acagaggagtccttcttcatcctgcgttatttggctgataaagtagcttcctctcatgag
aacaatgaaggagtgactgaggatggtattgaagatgcctttgaggtccagggagagatc
caggagattgtgaagactggtctctgggtcggagactgcttcatctacaccagctctgtg
aacagactaaactactatgttggaggagagattgtcacaattgctcatctggacagaacc
atgtacttactgggttacatacccaaagatgatcgtctgtacctcggagacaaggagctc
aatattgtcagttactccctgctggtctccgtcctggagtaccagactgctgtaatgagg
agggactttgggatggctgacaaggtgttgcccacaattccaaaagagcagcggaccagg
gtggcccatttcctggagaaacagggtttcaagcagcaggcactggctgtgtccacagac
ccagagcacaggtttgagctggccttgcagctgggagagttgaagattgcttatcagctg
gctgtggaggcggagtcggagcagaaatggaagcagctagcagagcttgctatcagcaag
tgtcaattcagcctggcccaggaatgtctgcaccacgcccaggattacggtggcctgctc
ctccttgccacagcctctggtaacgccacaatggttggcaagctggctgagggggcagag
agggacgggaaaaacaatgtggccttcatgacctacttcttgcaggggaaactggatcag
tgtttggagcttctgatcaggaccaaccgactacctgaggctgccttcctggctcgcacc
tacctgcccagccaggtgtcccgtgtggtgaaattgtggagggagaacctggcgaaggtc
aaccagaaggcggctgaatccttagcagaccctacagagtatgagaatctgttccccgga
ttgaaagaagcctttgcagccgagtattatctgagagagacctgcttgggcacctccagg
cctgcaacggactatcctcttgtcacacccaatgaagacaggaacattcttgaggaggct
gtaggatacgagcccaaaggaaccttcattcctacaaagacacaggatcctgagaagaag
aagaaggaggaggagaaagaggagaagaagaaggaggaggatgaggaggaggaagaggaa
gaggagaaattattatcctcaatggcagaattttctgttgctgcagcagcagcagcacct
gaggccactttacaacctgaacctgctgatcccacagcagtggaggaacaggaggaggaa
ataccagaattttcactcaaagataagactctggacgagctggacgtggaccttgacaac
atggagctggatgacatcgacaccacagacgttaaccttgatgatgacttcctagatgat
taa
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