Hippoglossus hippoglossus (Atlantic halibut): 117778595
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Entry
117778595 CDS
T07778
Symbol
rp1l1a
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein
KO
K19538
retinitis pigmentosa 1
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hhip03037
]
117778595 (rp1l1a)
04812 Cytoskeleton proteins [BR:
hhip04812
]
117778595 (rp1l1a)
Cilium and associated proteins [BR:
hhip03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
117778595 (rp1l1a)
Cytoskeleton proteins [BR:
hhip04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
117778595 (rp1l1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCX
DUF7406
Motif
Other DBs
NCBI-GeneID:
117778595
NCBI-ProteinID:
XP_034470199
LinkDB
All DBs
Position
2:7277740..7291802
Genome browser
AA seq
2550 aa
AA seq
DB search
MWDPRPPSKDGSPLASPCPSDVRLAHVTTACPAKRITFYKSGDSQFGGVRMAVHKRSFKC
FDALLDDLSQKVPLPFGVRTVTTPRGTNTIRHLEQLQDGGCYLCSDRRQAKPINMELASK
RPSIWYHQNRRPQRPESSSTTPPNHLPYRQRRILLVKNSEPGMTRSVVLSRRSTRSLGAF
LDEVSELMQFHVRKLYTAEGRKIDSVQSLMTCPPVLVCVGREAFSPMLANFIKKNSEEKL
PGLDSRSPGLGPRTPGNGARSPAVQGARSPPHGAQSRASEYSEGHESKKNVNFGLETKKS
IIHPRSDSSNRSNHFSMSSEKSYGNGVGAYSQARPAIMNDDIEKRVLVNKDGSLSVEMRV
RFRLHNDETVQWSTQIKKSPSLTNDCCPLSQVQAHYLHNGQSESCSDPDSMSFDPEVVEY
SSRPVQRALEANHCPCCYQRPEQHYDLWENPAHSHKQPLVPPPHPHTSSHTRRRHTNSSS
SSSSCNSRRVVHCRAQHSSCGGGSGSEQSQLIQEEMCVTEQVEHTVEVEQDGDKHVEVCR
VSRCHSRSEVVTRDSNLRPLSSSKSGEEEVMIEEEQERPQSAVSCSSHVLQSLKEDQDDE
EEDLPPSASRCHHSDEPSPSPSSKTSTVKNHRDGEERASSAVSAASSCCCGSVTQLPTAE
AEEMDRAPSSKSKVSRASCRSGRTGLSTGSKKSGASSMCPNCDGCKREATSNPASPQQKQ
ENGANDSNDDASEDSAVSTQSNKSNLTNSGRSSAESNVLEGRASSAVSRASNPEVKEEER
APSAISATSHRSNRSHRSGSNGATGITVDKEEGRSLSAMSARSRKSETPDTRTREEAEEE
NVGERAISSLSVKSGVSAKTGTSVKSHKSNCPLKSNAASPTDNTAIEEETSPSSLSERPH
SAVSAKSNVTAKSRASHRSACSRCAKVKSPGAEEATRQEAGTDGQNRTASAMSAKSNLSV
KSNNSHKSTKASERSLSPRSEAQGEERPASQTSARSVKSTNVSVKSSKSRKSNCDENETE
ASPSSKVEEEAEETEGETVEEETQHEPERAASARSTKSHRSKMSNENTGDDENANERTAS
VLSGKSALSEKSHHSKTDVDRSPSAASGKSKKSKCSAASPDGDEQPTETEERVASAMSVK
SKSSARSHLKSASPGPNAVTINSPEEVDEEGSETTERAPSAASAKSGKSHVSSNHKGRKA
PAAPGSRQSSAQQLVPGPGAGETRGPSASSVHSATSAKSGKSKCRCGAASGEDKKEGNNE
EATERAASVLSSSSKRQRRDSGGTEQPLSRCSSGSVSLGLPEDQETADSDSGKSCVSFCT
NTESKGRGKTAASEGPKTQRGSAAKKDVEGRASKNKSILSHNPPAVDIPTIETPGGGDGR
DEEDGGGQKAERAASAISAKSGRSHKSSCSCSAKVTEQQAGNELQMESDSKTKNLNAHNN
RTSSSMSSSSAKVRNKSRASANVAKTPVGDSSGNDTGNISEVKGQEDAAASVHSKSLCCL
RPESAASAQSGSKTTVKSVKGRESRSKAGSNGGDPCPLHDSRPGSKVESETTLSHSLSAA
DLLKETMAARSLRPESKASKTSDRTGGERSAKSQRKRNQKDTNPELTPACLPNASPNEVV
NNWLRSIPANSSMLALGDELEEGEQEAEEKPGEEEVAQVEESPEDDKVEEEEERTEAEEG
AEKEEEAKCDTAEEEQNSDPAPGDETVTSSPTRLLSADSLPRNLHPSVAVMKVLLSSSLG
RCRSLPEVSPVYGRRLSTSARGFLDCLAQLQLIEPALSPGSDLQKNPNQQYEEIMTILQS
LWLTGPTDTEVKKGKDIGKEQVTPPRSSSGVGMSSGSGGSGKENGNKDGHETPPKETESL
PEVQVQSEEQSTLPPSLDSPKATENPSSSDKSSANDSSKSPTDNEQETVDDSSSGTPSTV
LRTPLSKKLSQDPDPVWVLHLLKKLEKQFINHYINAMAEFKVRWDLDDSLMLDTMISELK
EEVSRRIQSSIEREIRKIKGRAGRGGRSPRPPQGANLSRESTVTEKRRRILKVMKNQSVK
TTDSVSDGEMDGDFSDQRSDDEYCPCDACVLKKLAARPLKANPLAADAPVMMEFDLLKIL
QRKKSPEPAPVAVHQSADVEGEEGRNLEVVQEEEEEEEEETKEDIKAEVVLEEMIPEEDE
EEGEGQTEEEEKVEKEENSEDGKEQEEGEKEGEVAGEEGASGNGEEEEEEAEGQTEEGEK
EEEEKVEKEENSEDGKEQEEGEKEGEGTGEEGPSGNGEEEEEEEGEAECQCQCARNEEES
DKAEEEEEAEETGDNTGEDEAADDEGDNEDETGTGEEESDMETVKEAPVGKGETTEGQEE
EEGEEEECEASDSKPEEEETTGKESGEEEAEDEDDGDDGGGEEESHEEGEGGESEEQEGA
PPQDQGATEGEEADAEDSDTDKKSPSDTSVDEVVAGTTGDEEEKEAGGGDAEEEEVGEDA
VEEFKPEEEEEEEEVNGSRKEEGALLHQFTRTSVESQPGSLEDIHTDSPPVSNIEVPKMV
STGGGCEPEEEPVPGEGQMSQTQRQRYGPG
NT seq
7653 nt
NT seq
+upstream
nt +downstream
nt
atgtgggacccccggcccccgtctaaagatggctcgcccctcgcctcaccttgcccctcc
gacgtgcgcctcgcccacgtgaccacagcctgcccggcgaagcggatcaccttctacaaa
agcggcgacagccagttcgggggcgtcaggatggccgtccacaagcgcagcttcaaatgc
ttcgacgccctgctggacgacctttcccaaaaggtgccccttccgtttggtgtgcggact
gtaaccactccccgtggcaccaacaccatccggcacctcgagcagctccaggacggcggc
tgctacctgtgctctgaccggcgccaggctaagccgatcaacatggagctggcaagcaaa
cgcccaagcatctggtaccatcagaaccgcagaccccagcggcccgagagctcgtccacg
acgccacccaaccatctgccttacaggcagcgccgaatcctgctggtgaagaacagcgag
ccgggcatgacgaggagcgtggtgctgagcaggaggtcgaccaggagcctcggggccttt
ctggatgaagtgtcagagttgatgcagtttcacgttcgcaagctctacactgcagaggga
cgcaagatcgacagcgtgcagagcctgatgacctgcccccccgtgttggtgtgcgtcggc
cgggaagcgttcagtcccatgctggccaacttcatcaagaagaactcggaggaaaagctg
cctggtctggacagcaggtcgcctggtctcggtccgaggacgccaggaaacggggccaga
tctcctgccgttcagggagcgagatccccacctcatggagctcagtccagagccagcgag
tacagcgaaggacatgagagcaagaaaaatgtgaacttcggtctggaaaccaagaagagc
atcatccaccctcgttctgactcctcaaaccgctccaaccatttctcgatgtcttcagag
aagtcgtacggcaacggcgtcggtgcctactcccaggcccgaccggcgattatgaacgat
gacatcgaaaagcgcgtgcttgtgaataaagacggcagcctctcggtcgagatgagggtc
cgttttcgcctccacaacgatgagaccgtacaatggtccacgcagattaaaaaatcccct
tctctgaccaatgactgttgccccctgagccaggtccaagcccattacctgcacaatggc
caatcggaaagctgctccgatcctgattccatgtcattcgacccggaggttgtggaatac
tccagccgacctgtgcagcgtgcattggaagcaaaccactgcccttgctgttaccagcga
ccggagcagcactacgacttgtgggaaaatccagcacacagccacaaacagcctcttgtc
ccacccccacatccacacacctccagccacaccagaaggagacatacaaactcctcgagc
tcctcttcttcctgtaattccaggagagtggtgcactgtcgagcacagcactccagctgc
ggaggcggctcaggctcagagcagagccagctgatccaggaggagatgtgcgtgacggag
caggttgaacacacagtagaggtggagcaggacggagacaaacacgtagaggtttgcagg
gtgagccggtgccacagccgcagcgaagtagtcaccagagatagcaacctacgacctctc
agcagcagcaagtcaggggaggaagaggtgatgatcgaggaagagcaggagcgtccacag
tctgcagtcagctgctcctcacatgtcctgcagtcattgaaggaggatcaggatgatgag
gaggaggacctgccacccagcgcctcacggtgccatcacagcgatgaaccatcaccatct
ccatcaagcaaaacctcaacagttaaaaaccacagggacggggaagagagagcgagcagt
gcagtgtctgcagcttcttcctgttgctgtggatccgtcactcaactcccaacagctgaa
gcagaggagatggatcgcgcccccagctccaagtccaaagtgagcagagcctcttgcagg
tctggtcgcacaggactttcaacaggctctaagaaatcaggggcatcgagtatgtgcccc
aactgtgacggctgcaaacgagaagccacttcaaaccctgcttcacctcaacagaagcag
gagaacggcgccaacgacagtaatgacgatgcctcggaggattcagccgtgtcaacacaa
tccaacaagtccaacctcaccaactctggccgcagttctgcagaatcaaacgtgttggag
ggcagagcatcgagtgccgtgtccagagcatcgaaccctgaagtaaaagaagaagaaagg
gctccgagtgccatctcagcaacaagccacaggtccaataggtcgcacaggtctggtagt
aatggggccactggtatcacagtggacaaagaggaggggaggagcctcagcgccatgtct
gccaggtccaggaagtctgaaacacctgacacgagaacaagagaggaagccgaggaagaa
aatgtcggagagagagcaatcagctccttgtcagtcaaatctggtgtttcggcaaagacc
ggcacttcagtcaaatctcacaagtccaactgtccattaaaaagtaacgctgcctcccca
actgacaatacagccatcgaagaggaaacatctcccagtagcctttctgaaagaccccat
agtgccgtgtcagcgaaatcaaatgttacagcaaagtctagggcttctcacaggtccgct
tgcagtcgctgtgcaaaagttaaatctccaggtgctgaggaagcaacaagacaggaagca
ggaacagacgggcagaacagaacagcgagtgccatgtcagccaagtctaatctgtcagtc
aagtctaataattcccataagtccaccaaagcttcggagaggtcactgtcgcccaggtcg
gaggctcagggagaggaaaggccagcaagtcaaacgtctgccagatcagtcaaatcaaca
aatgtgtctgtaaagtcctcgaagtcacgcaagtctaactgcgatgaaaatgaaactgag
gcatctccgagctcaaaggtagaagaagaggccgaggagacagaaggtgagacggtagaa
gaagaaacacaacacgagccagaaagagcagccagcgcccggtccacaaagtctcataga
tccaaaatgtccaatgagaatacaggagatgatgaaaatgctaatgagcggactgccagt
gttttatctggtaaatcagctctctctgagaagtcccaccattcgaagacagacgtggac
agaagccctagtgccgcgtcgggaaagtccaagaagtccaagtgctctgcagcttctcca
gatggagacgagcagccaactgaaaccgaggagcgggttgccagtgccatgtctgtcaag
tccaaatcgtcagcgcggtcccatctcaaatcggcgtcaccaggtccaaatgcggttacc
atcaactcaccagaggaggttgatgaagaaggaagtgagacgacagagagagctccgagc
gctgcatcagctaaatctggaaaatctcatgtttcatccaatcataaaggacgtaaagct
ccagcagcacccggcagtcgtcaatcctctgcacagcagttggtgcctggccccggtgcg
ggagagacgagaggtccgagcgcttcgtcagttcactccgcaacctctgctaaatctggc
aagtccaaatgtcgctgtggagcagcttcaggggaggataagaaggagggaaataatgaa
gaggctactgaaagggctgcgagcgtcttatcgtcctcttccaagagacagaggagggat
tcaggaggcaccgagcaaccgttgagtcgatgctcatcaggctcagtctctctcgggttg
ccagaagaccaagaaacagccgactcagacagtgggaagtcctgtgtttcattttgcaca
aacactgagagtaaaggccgagggaagacggcagcatctgagggtcctaaaacccagagg
ggctctgctgcgaagaaagatgtggaaggaagagcgtccaagaataaaagcattttgtct
cacaatcctccagctgtcgacatccccacgatagaaactccaggagggggtgatggtcga
gatgaagaagatggtggagggcaaaaagcagaaagagcagccagtgcaatttcagccaaa
agcggcagatcccacaagtcctcgtgtagctgtagcgccaaagtgacagagcaacaagca
ggaaatgagcttcaaatggaaagtgattcaaaaacaaaaaatctgaacgcccacaacaac
agaacctcgtcttcaatgtcatcatcaagtgctaaagttcggaacaaatcccgtgcaagt
gccaatgtagcaaaaaccccggttggagattcatcaggtaacgacactggaaacatcagt
gaggtcaaagggcaagaagacgctgcagccagtgtccactccaagagtctgtgttgcctc
aggcctgagtctgcagcttcggctcaatccgggtccaaaacgaccgtcaagtcagtcaaa
ggccgtgagtccagatctaaagcaggaagcaacggtggcgacccctgtcccctgcatgac
tccagaccgggcagcaaagtggagagtgagaccactctgtctcactctctgtccgctgcc
gacctgctgaaggaaaccatggctgcacgttcgctcagaccagagtcgaaggccagcaaa
accagtgacagaacggggggagagagaagcgcaaagagtcagagaaaaaggaaccagaag
gatacaaatccagaactcacacctgcctgtctgcccaacgcttcccccaacgaggtcgtg
aacaactggctgcggagcattcctgccaacagcagcatgctggcactgggcgacgagctg
gaagagggggagcaggaggcggaggagaaacctggagaggaggaggtggcacaggtggag
gagagtcctgaagacgataaagtggaggaggaggaggagagaactgaggctgaggaggga
gcagagaaagaggaagaagctaaatgtgacacagcagaggaggagcagaattcagatcca
gctcccggtgatgaaacggtgacgtctagccccactcggctgttaagtgctgactcgctg
cccaggaacctgcatccgtctgtggctgtgatgaaggttcttctgagttcctctctgggg
cgatgccgcagtttgccagaggtgtctccagtttacggtcgtcgcctgagcacgtcagcc
agagggttcctggactgtttggcccagctccagctcatcgagccggcactgagccccggt
agtgacctgcagaaaaaccctaaccagcagtatgaagagatcatgaccatcctccagtcg
ctctggctcactgggcccactgacactgaggtcaagaagggcaaggacatcggcaaggag
caggtgacgcctccgaggtcctcatccggggtgggaatgagcagtggctccggtgggtcg
ggaaaggagaatggaaataaagacggacacgaaacccctccaaaggagactgaatcttta
ccagaggtgcaggtgcagagtgaagaacaaagtacactccctccaagtctggacagcccg
aaagccacggagaacccgtcgtcctcggacaagagctctgccaacgacagctccaaatcc
cccacggacaacgagcaggagacggtggacgacagcagttcaggaacaccctcgactgtc
ctgcgaacacctctgtccaaaaaactatcccaagaccccgatccagtttgggtcctgcac
cttctgaagaagctggagaagcagttcataaaccactacatcaacgccatggcggagttt
aaagttcgctgggacctggacgacagcctcatgctggacacgatgatctccgagctcaag
gaggaggtgagtcggcgcattcagagcagcatcgaacgcgagataaggaagattaagggc
cgagcaggcagagggggacggtcgccccggccgccccagggagcgaacctctccagggag
tccaccgtgacggagaagaggcgtcggattttaaaggtcatgaagaaccaatccgtgaaa
accactgactctgtcagtgatggagagatggacggtgatttcagtgaccagcgaagtgat
gatgagtactgcccctgcgatgcttgtgtcctcaagaaattggccgcccggcctctcaaa
gcgaacccattggcggccgacgcaccagtgatgatggagtttgaccttcttaagatactt
cagcggaagaaaagcccagagcctgcgcctgtagccgtgcaccagtctgcggacgtggaa
ggtgaggaggggaggaatttggaggtagtgcaggaggaagaggaggaggaggaggaggaa
acaaaagaggacattaaagctgaggttgttttagaggagatgatcccagaggaggacgag
gaagaaggtgagggtcagacagaagaagaggagaaggtagaaaaggaggaaaatagtgaa
gatggtaaggagcaggaggagggagagaaagaaggtgaggtagcaggagaagagggggca
tcaggaaatggagaggaggaggaagaggaggctgagggtcagacagaagaaggggagaag
gaagaagaggagaaggtagaaaaggaggaaaatagtgaagatggtaaggagcaggaagag
ggagagaaagaaggtgagggaacaggagaagaggggccatcgggaaatggagaggaggag
gaagaggaggagggtgaggcagaatgccaatgtcagtgtgccagaaatgaagaggagagt
gacaaggctgaagaggaagaggaggctgaggaaactggggacaacacaggtgaagatgag
gcggcagatgatgagggggacaatgaggacgagacaggaactggggaggaggagagtgac
atggagacagttaaagaggcaccagtaggtaaaggagagaccactgagggtcaggaggag
gaggagggggaggaggaggagtgtgaggcgtctgattctaagcccgaggaagaggaaacg
acaggaaaggaaagtggagaagaggaggcagaggatgaagatgacggggatgatgggggc
ggagaggaggagtcgcacgaagagggagagggaggagaaagtgaggagcaggaaggagcc
cccccacaggaccagggggcgactgagggagaggaggccgacgctgaagactcagacaca
gacaaaaaaagcccaagcgacaccagtgtggatgaagttgttgctgggaccactggtgac
gaggaagagaaagaggcgggaggaggagacgcagaggaggaagaggtcggggaagacgcc
gtggaggagttcaagcccgaggaagaggaggaggaggaggaagtgaacggcagcagaaag
gaggagggtgctctcctccatcagttcaccaggacgtctgtggagtcccagcccggctcc
ttggaggacattcacacggattcaccacctgtcagcaacatagaagtgcccaagatggtg
tccactgggggggggtgcgagcccgaagaggagccggtccccggggagggtcaaatgtcg
caaacccaaagacagagatacggacctggatga
DBGET
integrated database retrieval system
