KEGG   Hippoglossus hippoglossus (Atlantic halibut): 117778769
Entry
117778769         CDS       T07778                                 
Name
(RefSeq) RNA-binding protein MEX3B-like
  KO
K15686  RNA-binding protein MEX3 [EC:2.3.2.27]
Organism
hhip  Hippoglossus hippoglossus (Atlantic halibut)
Brite
KEGG Orthology (KO) [BR:hhip00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hhip03019]
    117778769
   04121 Ubiquitin system [BR:hhip04121]
    117778769
Enzymes [BR:hhip01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117778769
Messenger RNA biogenesis [BR:hhip03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     117778769
Ubiquitin system [BR:hhip04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    117778769
SSDB
Motif
Pfam: KH_1 KH_Vigilin zf-C3HC4_3 KH-I_KHDC4-BBP zf-RING_2 zf-C3HC4 KH_BICC1_1st KH_2 RING_XB3-XBAT31 KH_DEAH11_2nd Prok-RING_4 zf-RING_5 zf-RING_UBOX
Other DBs
NCBI-GeneID: 117778769
NCBI-ProteinID: XP_034470443
LinkDB
Position
17:complement(11354046..11362899)
AA seq 649 aa
MPSPLFHPEIMDHDVVISSQHNGVGLPRETDHESRDEDHQEALRFALDQLSLMALEKVDC
GGGLADSLDGTSGPASEGCNGVGGGGYMDLQMLEHPGGSRDSPSSCSPSPEYYGSGGYHM
TGSHPMLHGEQSSVLCSRKRSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKT
PVRGEEPVFIVTGRREDVEMAKREIVSAAEHFSMIRASRCKAGAPGGGGSLPGPPHLPGQ
TTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSREKDPVFEVTGMPENVDRAREE
IETHITLRTGTFVDLQGDNDFHSNGTDVSLEGLGSLNGGLPASLWSRANNHHSGPPPPTS
SPPATAPMSMHHSSSRKVSSSSTYQAHNGGMNSAESFSTARKANEGGSPTSPFSTGSSST
GGGFTFGGDSTPGLPSSDELGFEFSAANIWAPFANGGTGNKTAGSSQQQQPLRRNSSGLS
GGAITPRLSPTLPQDAGVGPMDHPLARRAQSDPLSTLSWLQSGSAGGGSFSGASSSSSGG
SSTGYSSCSASSLPGGSPTDSEGGSSGVGLSSGILSRLKGGSGVAGLVGVGPGVNRDCFV
CFESEVTAALVPCGHNLFCMECAGQICQSTEPECPVCHTPTTQCIRIFS
NT seq 1950 nt   +upstreamnt  +downstreamnt
atgcctagccctttattccaccccgagattatggaccacgacgtggtgatcagcagccag
cacaatggggtcggtctgccccgagagacggaccatgagtcccgggatgaggatcaccaa
gaggcgctccgcttcgccctggaccagctgtcactcatggccctggagaaagtggactgt
gggggcggactggccgactctctggacgggacctcgggtcccgcttcggagggctgcaac
ggcgtcggtggagggggctacatggacctacagatgctggagcatcccggtgggtcgcgg
gactcgccctcatcctgctccccatccccagagtactacggctcgggcgggtaccacatg
accggctcgcaccccatgctccacggggaacaaagctccgtcctctgcagcaggaaaaga
agtgtcaacatgactgaatgtgtgcctgtgcccagctccgagcatgtggctgaaatagta
ggaagacaaggttgtaagatcaaggccttgcgtgccaaaacaaacacctacataaagact
ccagtgaggggcgaggaacccgtcttcatcgtgacaggacgcagagaggatgtggagatg
gccaaacgtgaaattgtctctgcggccgagcatttctctatgatccgggcgtcccgctgc
aaagctggcgcacccggagggggaggctctcttcctggaccaccacaccttcctggacag
accaccatacaggtgagggtgccctacagagttgttggtttagttgttggaccaaaggga
gcaactatcaagcgcatccagcagcagactcacacctacatcgtgacgcccagtcgagag
aaggaccccgtgttcgaggtgaccgggatgccggaaaacgtggaccgagcgagagaggag
atcgagacccacatcaccctgcgaactggaacctttgtcgacctgcagggagacaatgac
ttccactccaacggcaccgatgtcagcctggaaggcctgggctctctgaacggcgggctg
ccagcatctctgtggtccagggctaacaaccaccattctggccctcctccccctacatcc
tcccctcctgccactgctcccatgtccatgcaccactcctccagccgaaaggtgtcctcc
tcatccacctaccaagcgcacaacggcggtatgaactcggcggaaagcttcagcactgcc
cggaaagccaacgagggaggcagtcccactagcccttttagcacaggctccagcagcact
ggaggagggttcacgttcgggggtgactccaccccggggctgccctcctcagatgaactg
ggctttgagttcagtgctgccaatatctgggctccttttgcaaatggtggaacaggcaat
aagacagccggctcctcccagcagcagcagcctctacgtcgcaacagcagcgggctcagt
ggcggcgccatcactccacgattgtctccaactctgcctcaggacgcaggtgtgggccct
atggatcaccctctggcccgtcgtgcacaaagtgatcccctcagcactctctcctggctc
cagtcaggcagcgcaggaggcggctccttctctggagcatccagctccagctccgggggc
tcgtcaacaggttactcctcctgctcggcctcctccctgcccggcggctccccaactgac
tccgagggaggcagcagtggcgtgggcctcagctctgggatcctgagtcgactgaaaggc
ggctctggggtggcgggcctggtcggcgtcggccccggggtcaacagggactgcttcgtg
tgttttgagagcgaggtgacggcagccctggtgccttgcggccacaacctgttctgcatg
gagtgtgccgggcaaatctgccagtcaactgagccggagtgccctgtctgccacaccccc
accacacagtgcatccgcatcttctcctaa

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