Hippoglossus hippoglossus (Atlantic halibut): 117779098
Help
Entry
117779098 CDS
T07778
Name
(RefSeq) calpain-1 catalytic subunit-like isoform X1
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
hhip
Hippoglossus hippoglossus (Atlantic halibut)
Pathway
hhip04141
Protein processing in endoplasmic reticulum
hhip04210
Apoptosis
hhip04217
Necroptosis
hhip04218
Cellular senescence
hhip04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
hhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117779098
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
117779098
04217 Necroptosis
117779098
04218 Cellular senescence
117779098
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117779098
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hhip01002
]
117779098
Enzymes [BR:
hhip01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
117779098
Peptidases and inhibitors [BR:
hhip01002
]
Cysteine peptidases
Family C2: calpain family
117779098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_7
EF-hand_5
CAPN13-like_C_EFh
Sclerostin
Motif
Other DBs
NCBI-GeneID:
117779098
NCBI-ProteinID:
XP_034470860
LinkDB
All DBs
Position
18:16128318..16166560
Genome browser
AA seq
707 aa
AA seq
DB search
MVEERIYTATGMAARLRSQWDRDEGLGQNDNAVKFLGQDYESLRAQSLQSRRLFEDNLFA
CASSSLGFDELGPKSSKTQGVRWMRPTEFCKRPEFIVDGATRTDICQGALGDCWLLAAIA
SLTLNNSLLHRVVPHGQGFQQGYAGIFHFQFWQFGEWVEVVIDDRLPVKDGKLLFVHSVE
GTEFWSALLEKAYAKLNGCYEALSGGSTSEGFEDFTGGVTEMFDLAKAPSDLYSIIKRAI
ERGSLLGCSIDITSTRDMEAVTFKKLVKGHAYSVTAVDEVVYRGNMTKLVRIRNPWGEVE
WTGAWSDNSREWDGVDRSVRGRLQNQSEDGEFWMSFSDFLREFSRLEICNITADALQNSQ
LKKWSSSLYQGEWRRGSTAGGCRNFPATFWLNPQFKIALQHPDAPGQSECSFLVALMQKD
RRKKRREGKDMETIGFALYEVPDEFAGRSGVHLKRDFFLTHGSSARSELFINLREVSSRL
RLPAGEYIIVPSTYDPNKEADFVLRVFSEKPAASEELDDKVEAELPTEVELDESQIDAAF
KNLFRQLAGPDMEISLTELQTILNRIISKHKDLKTDGFTKEACRSMINLMDTDGSGKLGL
TEFHVLWEKVKRYLTIFRQFDLDKSGTMSSYEMRMALESAGFKLTNHLFQLIILRYTEAD
MAVDFDNFVTCLVRLETMFKTFKTLDTDADGQITLNFYQWITLTMFA
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggtggaggagcgcatctacaccgccacgggcatggccgccaggctgaggagccagtgg
gatcgggatgaaggtctggggcagaacgacaacgcggtgaagtttctgggtcaggattac
gagtctctgagagcccagtccctgcagagtcggaggctgttcgaggacaacctgttcgcc
tgcgcctcgtcgtccctgggattcgacgagctcggcccgaaatcctccaagacccaagga
gtccgctggatgagacccacggagttctgcaagcggcccgagttcatcgtagacggagcg
actcgcacagacatctgtcagggagctctgggcgactgctggctgctggctgccatcgcc
tcgctgaccttaaacaactccctcctccaccgagtggttcctcacggtcagggcttccag
cagggatacgccggcatctttcacttccagttctggcagtttggcgagtgggtggaggtg
gtgatcgacgaccggctgccggtgaaggacgggaagctgctgttcgtccactcagtggag
gggacggagttctggagcgcgctgctggagaaggcctacgccaagctgaacggctgttat
gaagctctgtcgggcggcagcacgtcggaggggtttgaggacttcaccggcggcgtgacg
gagatgttcgatctcgcgaaggcgccgtctgacctctacagcatcatcaaacgggccatc
gagcgcgggtcactgctgggctgctccattgacatcaccagcacacgagacatggaggcc
gtcaccttcaagaagctggtgaagggacacgcctactctgtgaccgcagtggacgaggtg
gtgtacagaggaaacatgaccaagctggtccgcatcaggaacccctggggggaggtggag
tggaccggggcctggagcgacaactccagagagtgggacggcgtggatcgctccgtcaga
ggtcggctacagaaccaaagcgaggacggggagttctggatgtcgttcagcgacttcctg
cgcgagttcagccgcctggagatctgtaacataacggccgacgccctgcagaacagccag
ctgaagaagtggagctcctcgctctaccagggggagtggaggcgaggcagcacagcaggg
ggctgcaggaacttcccagccactttctggctcaaccctcagttcaagatcgcgctgcag
cacccggacgcccccggccaatcagagtgcagcttcctggtggccctcatgcaaaaggac
cgcaggaagaaacggcgagaaggcaaagacatggagaccatcgggttcgctctgtacgag
gttccagatgagttcgcgggcaggtccggggtccatctgaagcgggacttcttcctcacc
cacggctccagcgctcgctccgagctcttcatcaacctgagggaggtcagctcgcggctg
cggctgccggcgggcgagtacatcatcgtcccctccacgtacgatcccaacaaagaggcc
gacttcgtcctccgagttttctctgagaagccggctgcctccgaggagcttgacgacaag
gtggaggcggagctgcccacagaggtggagctggatgagagccagatcgacgccgccttc
aagaatctgttcaggcagctggcggggccggacatggagatcagtctgacggagctgcag
accatcctcaacaggatcatcagcaaacataaagacctgaagacggacggcttcaccaaa
gaagcgtgtcgcagcatgatcaacctcatggacacggacggcagcgggaaactgggcctg
acggagttccacgtcctctgggagaaggttaaacgctacctgaccatattcaggcagttc
gacttggacaagtcgggcaccatgagctcgtatgagatgaggatggctctggaatccgca
gggttcaagttgaccaaccacctgttccagctgatcatcctgcgctacaccgaggccgac
atggctgtggactttgacaactttgtcacttgtctggtccgactggagaccatgttcaaa
acctttaagaccttggacacagacgcagacggacaaataaccctcaacttctaccagtgg
atcaccctgaccatgtttgcctga
DBGET
integrated database retrieval system
