Hungatella hathewayi: NQ487_25030
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Entry
NQ487_25030 CDS
T08453
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hhj
Hungatella hathewayi
Brite
KEGG Orthology (KO) [BR:
hhj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhj03016
]
NQ487_25030
Enzymes [BR:
hhj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NQ487_25030
Transfer RNA biogenesis [BR:
hhj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NQ487_25030
Prokaryotic type
tRNA splicing ligases
NQ487_25030
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF7152
Motif
Other DBs
NCBI-ProteinID:
UWO84076
LinkDB
All DBs
Position
complement(5493342..5494574)
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AA seq
410 aa
AA seq
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MFTWKEEQMNKPVKIWLENIEEAEEGCLEQARHLAQLPFIHKWACLMPDTHQGKGMPIGG
VIAADGVIIPNAVGVDIGCGMNFVSTNIKAEDMKPVMTGNGTMFQAITGEIMRNIPVGYN
SYKKRQESEVLDRCLEHASDYEKNEALFPLMEDAFYQIGTLGGGNHFIELQEDQDGYLGI
MIHSGSRHFGKEICDYFHKRARELNAAWHSAVPDSYHLAFLPVDSAEGQDYIPWMNLALE
YAFENRKRMMEKTLEIVAEKVEKYLDTTMEFTEHINCHHNYASLETHYGKEVWVHRKGAT
RAGNGEMAVIPGAMGSYSYVVMGKGNPESFESSSHGAGRAYSRKAAMEKFSCEEVINDLK
AQGVVLGKMKKSDVAEESRFAYKDIDHVMDQQKDLVVPVKKLKTVGVVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtttacatggaaagaagagcagatgaataagccggtaaaaatctggctggaaaatata
gaagaagcagaggaaggctgtctggaacaggcgcgccacctggcacagcttccgtttatc
cataagtgggcgtgtctgatgcccgatacccaccagggaaaaggaatgccgatcggagga
gtcattgccgcagacggcgtcatcattccaaacgcagtaggagtcgatattggctgtggg
atgaattttgtttccaccaatataaaggcagaggatatgaaacctgttatgaccggtaat
ggaaccatgttccaggccattaccggagagatcatgagaaatatcccggttggttataat
tcatataagaagagacaggaatcggaggttctggaccggtgtctggaacacgcctccgat
tatgagaagaatgaagcgttgtttccgctgatggaggatgccttttaccagatcggtacg
ctgggcggcggcaaccattttatcgaactccaggaggatcaggatggatatctggggatt
atgattcactccggaagccgccattttggaaaggaaatctgtgattactttcacaagaga
gcaagggagttgaatgccgcgtggcacagcgctgtcccggattcgtaccatctggcattt
cttcctgtggacagtgcagaggggcaggactatattccgtggatgaacctggctttggaa
tacgcatttgaaaacagaaagcgtatgatggagaaaactctggaaattgtagctgagaag
gtggaaaagtatctggatacaaccatggaatttacggaacatatcaactgtcatcataat
tacgcctccttagagacacattacggaaaagaggtatgggttcaccggaagggggcgacg
agagccggaaacggtgagatggccgtaatcccgggagcgatggggtcctacagctatgta
gtcatggggaaaggaaatccggagagcttcgaaagctcgtctcatggagcgggaagggcc
tattcccgaaaggctgcaatggagaaattttcctgtgaagaagtcataaatgacttaaag
gcccagggcgtggttcttggaaaaatgaagaaatctgatgtggccgaggaaagccggttc
gcttacaaggatatagaccatgtgatggatcagcagaaagatctggtcgtcccggtcaaa
aagttaaagacggtcggtgtggtgaaaggttag
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