Hungatella hathewayi: NQ487_27090
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Entry
NQ487_27090 CDS
T08453
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hhj
Hungatella hathewayi
Pathway
hhj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hhj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQ487_27090 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhj03021
]
NQ487_27090 (rpoC)
03400 DNA repair and recombination proteins [BR:
hhj03400
]
NQ487_27090 (rpoC)
Enzymes [BR:
hhj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQ487_27090 (rpoC)
Transcription machinery [BR:
hhj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQ487_27090 (rpoC)
DNA repair and recombination proteins [BR:
hhj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQ487_27090 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Tudor_krimper_1st
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
UWO84469
LinkDB
All DBs
Position
complement(5931912..5935571)
Genome browser
AA seq
1219 aa
AA seq
DB search
MPENNETYHPMTFDAIKIGLASPEKILEWSHGEVKKPETINYRTLKPEKDGLFCERIFGP
SKDWECHCGKYKKIRYKGVICDRCGVEVTKASVRRERMGHIALAAPVSHIWYFKGIPSRM
GLILDISPRTLEKVLYFASYIVLDAADTGLQYKQVLSEKEYREEVDKYGYGAFRVGMGAE
AILELLQAIDLEKDSEELRKGLKDATGQKRARIIKRLEVVEAFRNSGNKPEWMIMTAIPV
IPPDIRPMVQLDGGRFATSDLNDLYRRIINRNNRLARLLELGAPDIIVRNEKRMLQEAVD
ALIDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIY
QCGLPKEMAIELFKPFVMKELVANGTAHNIKNAKKMVERLQTEVWDVLEDVIKEHPVMLN
RAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRFLL
LSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQERPGAKGEGMVFRNVNEAILAYENGAVTL
HSRIKARVTKKMADGTVKTGIVESTVGRFIFNEIVPQDLGFVDRSIPGNELLMEVDFHVG
KKQLKQILEKVINVHGAVQTAETLDDIKAIGYKYSTRAAMTVSISDMTVPESKPKLIADA
QATVDQIAKNFRRGLITEEERYKEVIDTWKETDDQLTHDLLTGLDKYNNIYMMADSGARG
SDKQIKQLAGMRGLMADTTGHTIELPIKSNFREGLDVLEYFISAHGARKGLSDTALRTAD
SGYLTRRLVDVSQDLIIREVDCCEGKSIPFMEIKAFMDGQETIEGLEERLTGRYIAETIT
DPDTGEVVVKANHMCTPKRAAAVMKVLQKLGRDSVKIRTVLTCKSHLGVCAKCYGANMAT
GQPVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGGDITQGLPRVEELFEARKPKGLA
IIAEFGGVATIKDTKKKREIIITDNETGNSKTYLIPYGSRIKIQDGVYLEAGDELTEGSI
NPHDILKIKGVRAVQDYMIQEVQRVYRLQGVEINDKHVEMIVRQMLKKIKIEESGDSDVL
PGTSMDVLDYNDMNEALLAEGKEPAEGKQVMLGITKASLATDSFLSAASFQETTKVLTEA
AINGKVDHLIGLKENVIIGKPIPAGTGMKRYRTVKLSTDGEEMNEDEIILGDDLVIPVTE
EYAEAEEVLDIDEIDEEDV
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagaataatgaaacttatcacccaatgacgttcgacgctatcaaaattgggtta
gcgtctccggaaaagattcttgaatggtcccatggcgaggttaaaaagcctgagacgatc
aactacagaaccttaaaaccggagaaagacggtcttttctgcgagagaatcttcggaccg
agtaaggactgggagtgtcactgcggtaaatacaaaaagatcagatacaaaggcgttatc
tgtgaccgatgcggtgtcgaagtcacaaaggccagtgttcgaagagagcgcatgggccat
atcgcccttgccgctccggtttcccatatctggtattttaagggaatcccgagccgtatg
ggcctgattctcgatatctcaccgagaacccttgaaaaggtactgtactttgcatcctat
atcgtgctggacgccgcggatacgggacttcagtataagcaggtattatctgagaaggaa
taccgtgaagaggttgataaatacggttacggcgcattccgtgttggaatgggtgcagag
gccatccttgagctgttgcaggccatcgatctggagaaggattccgaggaactgagaaaa
ggactgaaggatgcgaccggccagaagcgtgccagaattattaagagactggaagttgta
gaggcattccgcaactccggcaacaaaccggaatggatgatcatgactgcaatcccggtt
atccctccggatatccgcccgatggtacagttggatggcggacgttttgccacctccgat
ttaaatgatttatacagaagaattatcaatagaaataaccgtcttgcccgccttctggag
ctgggcgcgccggatatcattgtccgcaatgagaagcgtatgcttcaggaagctgttgac
gcgctgatcgataacggaagaagaggcagaccggttaccggaccgggaaaccgtgctctt
aaatctctttctgatatgttaaagggtaagcagggacgtttccgtcagaacctgttagga
aagcgagttgactattccggacgttccgttatcgttgtaggaccggaactgaagatttac
cagtgtggtcttccgaaagagatggcgatcgagttattcaagccgtttgttatgaaggag
ctggttgccaacggcaccgctcacaatataaagaatgccaagaagatggttgagagactt
cagaccgaggtctgggatgtgctggaagatgtaatcaaggagcacccggttatgttaaac
cgtgcccccactctgcacagacttggcatccaggcgttcgagccgattctggtggaaggt
aaggcgatcaagctgcatccgttggtttgtactgcatttaacgccgacttcgatggcgac
cagatggctgttcatctgcctttatctgtagaagcacaggctgagtgccgcttcttactg
ctttcgccaaacaacttactgaaaccttccgacggtggtcctgtggccgttccgtctcag
gatatggttctcggtatctattacctgacccaggaaagacctggcgccaagggcgagggc
atggtattccgcaatgtgaacgaggcaattcttgcgtatgagaacggagctgtaacctta
cactccagaatcaaggcgagagtgaccaagaagatggcggatggcaccgtaaagacaggc
attgttgagtccacggtaggccgtttcattttcaatgagatcgttcctcaggatcttggc
ttcgttgacagaagcattccgggcaacgagcttctgatggaggtggatttccacgttgga
aagaagcagttaaagcagattctggaaaaagttatcaacgttcacggggcagttcagacc
gctgagacgttagacgatattaaggcgattggttacaagtattccacgagagcggcaatg
accgtttccatttccgatatgaccgtgccggagagcaagccgaagctgattgccgacgct
caggcgacggttgaccagattgccaagaacttcagacgtggccttatcacggaagaagag
cgttataaagaggttattgatacctggaaggaaacggatgatcagctgactcacgatctg
ttaaccggtcttgacaagtacaacaacatctacatgatggcggactccggtgcccgaggt
tccgataagcagatcaaacagctggccggtatgcgtggacttatggccgatacaaccggt
cataccattgaacttccgattaagtccaacttccgtgaaggtctggacgtactggagtac
tttatctctgcgcacggtgcgcgtaaaggactttccgatacggcgctgcgtacagccgac
tccggttatttaacgagacgtcttgtagacgtttcccaggacctgattatccgtgaggta
gactgctgcgaaggcaagtcaattccgtttatggaaattaaggcattcatggatggccag
gagacgatcgaggggctggaggagagactgacaggcagatatattgctgaaaccatcacg
gatccggatacaggggaagtggttgtgaaggctaaccatatgtgtactccgaagcgtgca
gctgcggttatgaaggtattacagaagctgggacgcgattctgtcaagatccgtaccgtt
ctcacctgtaaatcccatctgggtgtctgtgcaaaatgttacggtgccaacatggctacg
ggacagccggtacaggtcggtgaggcagtcggtattattgccgctcagtccatcggtgaa
ccaggtacacagcttaccatgcgtacgttccataccggcggcgttgccggcggcgatatc
acacagggtcttccccgtgtcgaggagctttttgaggcacgtaagccaaagggacttgcg
attatcgcagagttcggcggcgtagccacgatcaaggatacgaagaagaaacgtgagatt
attattacagataatgagaccggcaattccaagacgtatctgatcccttacggttctaga
atcaagattcaggatggcgtctatttagaggccggcgacgagcttacagaaggtagtatc
aacccgcatgatatcttaaagatcaagggcgtccgcgcggtacaggattacatgattcag
gaagtacagcgtgtataccgtctgcagggtgttgagatcaatgataagcacgttgagatg
atcgtaagacagatgcttaagaagatcaagatcgaggagagcggagacagcgatgtgctt
ccgggaacctccatggacgttcttgattacaatgatatgaatgaggcgcttcttgcagaa
ggcaaggaaccagcggaaggaaagcaggttatgctgggtattaccaaggcatccctggct
accgattccttcttatcagcggcctccttccaggagacgaccaaggttctgaccgaagcc
gcgatcaacggcaaggtagaccacttaatcggtttaaaggagaacgtcatcatcggtaaa
ccgattccggcaggtaccggaatgaagcgttaccgtactgttaagctgagtacagacggg
gaagagatgaatgaggatgagattatccttggtgatgatcttgtaattcccgtgacagaa
gagtatgcagaggctgaggaagttcttgatattgatgaaatcgatgaagaggacgtataa
DBGET
integrated database retrieval system
