Hungatella hathewayi: NQ487_27095
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Entry
NQ487_27095 CDS
T08453
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hhj
Hungatella hathewayi
Pathway
hhj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hhj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQ487_27095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhj03021
]
NQ487_27095
03400 DNA repair and recombination proteins [BR:
hhj03400
]
NQ487_27095
Enzymes [BR:
hhj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQ487_27095
Transcription machinery [BR:
hhj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQ487_27095
DNA repair and recombination proteins [BR:
hhj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQ487_27095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
UWO84470
LinkDB
All DBs
Position
complement(5935600..5939466)
Genome browser
AA seq
1288 aa
AA seq
DB search
MEKSRMRPVPAGKSLRMSFSRQKEVLEMPNLIEIQKNSYQWFLDEGLKEVFEDISPIADF
AGHLSLEFVDFTLCKDDIKYTIEECKERDATYAAPLKVKVRLCNKDKDEINEHEIFMGDL
PLMTDTGSFVINGAERVIVSQLVRSPGIYYGIGHDKVGKELYTCTVIPNRGAWLEYETDS
NDIFYVRVDRTRKVPVTVLIRALGFGTNAEIIELFGEEPKLLASFGKDTSDNYQDGLLEL
YKKIRPGEPLSVDSAESLLNSMFFDPRRYDLAKVGRYKFNKKLHFKNRIVGHVLSEDVVD
TTTGEILATAGTTVDKQLAVDIQNAAVPYVWVEGLERRQKVLSNLMVDLGAYVSFDPKDA
GVTELVFYPVLEKILEDVGTEDEEVLKSAIHRSLGELIPKHVTKEDILASINYNMHLEQQ
VGNADDIDHLGNRRIRAVGELLQNQYRIGLSRMERVVRERMTTQDMEGITPQSLINIKPV
TAAVKEFFGSSQLSQFMDQNNPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHYTHYGRM
CPIETPEGPNIGLINSLATYARVNQYGFVEAPYRLVDKSDPNNPIVTDEVVYLTADEEDN
FVVAQANEPLDEEGHFIHKNISGRFREETSEFQRKSIDLMDVSPKMVFSVATAMIPFLEN
DDANRALMGSNMQRQAVPLLTTEAPVVGTGMEAKAAVDSGVCVVARNAGVVERSASNEII
IKRDADGGRDVYHLTKFKRSNQSNCYNQKPIVYKNNHVEKGEVIADGPSTQNGEIALGKN
PLIGFMTWEGYNYEDAVLLSERLVQEDVYTSVHIEEYEAEARDTKLGPEEITRDVPGVGE
DALKDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLK
VPHGAYGIIVDAKVFTRENGDELSPGVNQTVRIYIAQKRKISVGDKMAGRHGNKGVVSRV
LPVEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAARALGFNIATPVFDGANEI
DIMDTLDVANDYVNMTWEEFQDKYNDTLKPEVIEYLGEHLDHRELWKGVPLSRDGKVRLR
DGRTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEM
EVWALEAYGASYTLQEIMTVKSDDVVGRVKTYEAIIKGENIPEPGIPESFKVLLKELQSL
ALDVRVLRDDNTEVQIAESMDYEETDLRSIIEGDRRFREEEPLADYGFQKQEFQDDELVS
VEEEEDVDGIDDSYEDFDDADLDESDEE
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaagcagaatgcgtccggtcccagccggtaaaagcctgagaatgagcttctcg
agacagaaagaagtccttgagatgcctaacctgatcgagattcagaagaattcctatcag
tggttccttgatgagggattgaaggaagtcttcgaagatatctctccgatcgcagacttt
gcgggtcacttgagtctggaatttgttgactttacattatgtaaagacgacatcaagtat
accatagaagaatgcaaggaaagagatgcgacttacgcggctcctttaaaagtcaaggta
aggctttgcaataaagataaagatgagattaatgaacatgagatcttcatgggtgatctt
ccgcttatgacagataccggttccttcgtcattaacggtgccgaacgtgttattgtcagc
cagttagtacgttccccaggtatctattatggtatcggacatgacaaggtaggtaaggaa
ctctatacctgtacggtaattccaaaccgtggtgcgtggctggagtatgagactgactcc
aacgacattttctacgtacgtgtagacaggaccagaaaggtcccggttaccgtgctgatc
cgtgcccttggtttcggaacgaatgccgagatcatagagctgtttggcgaggagccaaag
cttttagccagcttcggtaaggatacgtccgataattaccaggatggcttattagagtta
tataagaagatccgcccaggtgaacctttatctgttgatagtgcagaaagtttattaaac
agtatgttctttgacccgagaagatatgatcttgccaaggtcggaagatataaatttaat
aagaagcttcatttcaagaaccgtatcgtgggccatgtgctctctgaggatgtggtggat
accactaccggcgagatattagcgacggccggcacgactgtagacaagcagcttgccgtg
gatattcagaatgcagccgtaccttacgtatgggtggaaggcttagagcgcaggcagaag
gtcttatccaacttaatggtggatttaggggcttacgtatccttcgatccgaaggacgca
ggtgttacggagttagtattctatccggtccttgaaaaaattctggaagatgttggcacg
gaagatgaggaagtattaaagagcgcgattcacagaagcttaggcgaactcattccgaag
catgtcacaaaagaagatatcctggcatccatcaactacaatatgcatttagagcagcag
gtggggaatgccgacgatatcgaccatttaggaaaccgtagaatccgtgcggtcggcgaa
ctgctgcagaaccagtaccggatcggcctttccagaatggaacgtgtggttcgtgagaga
atgacgacacaggatatggagggaatcactccccagtccttaatcaatattaaaccggtg
acggcggctgtgaaggaattcttcggaagttcccagctgtcccagttcatggatcagaac
aaccctctggctgagctgacccataagagacgtttatccgcattgggaccaggcggtctg
tcaagagaccgtgccggattcgaggttcgagacgtacactacacccattacggacgtatg
tgcccgattgagacccctgaaggtcctaacatcggtctgatcaactccctggctacgtat
gcgagggttaaccagtacggatttgtggaagcgccttaccgtcttgtagacaagagtgac
ccgaataaccccatcgttaccgacgaggtcgtttatctgactgccgacgaagaagataac
ttcgtagtcgcacaggcgaacgaaccgctggacgaggaaggccactttattcataagaat
atttccggacgtttccgtgaggagacatccgaattccagagaaagagcatcgatctgatg
gacgtttccccgaagatggtattctccgtggcgacagccatgattcctttcctggagaac
gacgatgccaaccgtgcgctgatgggatccaacatgcagcgtcaggccgtaccgcttttg
acaacggaagcacctgtggtcggtaccggtatggaagccaaggcagccgttgactcgggt
gtctgcgttgtggcgagaaatgccggcgtggtagagcgttccgcttccaacgagatcatc
atcaagagagatgccgatggcggaagagacgtttaccatctgacaaaatttaagagaagc
aaccagagcaactgttataatcagaagccgattgtatataagaataaccacgtggagaag
ggcgaggtcatcgcagacggcccgtccacacagaatggtgaaatcgcccttggtaagaac
ccgctcatcggattcatgacatgggaaggttataactacgaggatgccgttctgctcagt
gaaagacttgttcaggaggacgtttatacctccgttcatattgaggaatacgaggcggaa
gcccgtgataccaagctgggaccggaagagatcacccgcgacgtaccaggtgtcggtgaa
gacgcgttaaaggatctggatgagagaggtatcatccgaatcggtgcggaggtccgtgcc
ggcgatatcctggtcggaaaggtaactccgaagggagagaccgagctgacggccgaggag
agactgcttcgtgcgatcttcggtgagaaggcaagagaagtccgtgatacttccttaaag
gtaccgcacggcgcctacggtattatcgtggatgccaaggtatttacaagggagaacggc
gacgagctgtcccctggcgtgaaccagacggtacgcatttacattgcccagaagagaaag
atctccgttggtgataagatggccggccgtcacggaaacaagggtgttgtctcccgtgtg
cttccggttgaggatatgccgttccttccgaatggccgcccgctggatatcgtactgaac
ccgttgggcgtaccttcccgtatgaatatcgggcaggtgctggagattcacttaagcctt
gcggccagagcccttggatttaacattgcgactcctgtattcgatggtgcaaacgagatc
gatatcatggatacactcgatgttgccaatgattacgttaacatgacctgggaagaattc
caggataaatacaatgacaccctgaaaccggaagtaatcgaatatctgggagaacatctg
gaccacagagaactgtggaagggagttccgctcagccgcgacggtaaagtaaggcttcgc
gacggacgtaccggcgaatatttcgacagcccggttacgatcggacacatgcattatctg
aagctgcatcatctggttgacgataagattcatgcgcgttccacaggcccatactccctg
gttacccagcagcctctgggtggtaaagcccagttcggcggccagcgtttcggagagatg
gaggtttgggctctcgaggcgtatggcgcatcctacacactgcaggagatcatgacagtg
aagtcggatgatgtggtaggccgcgtgaagacgtatgaagcgattatcaagggcgagaac
atccctgaaccgggtattccggaatccttcaaggtactgttgaaagagcttcagtcactg
gcgctggatgtgcgcgtgcttcgtgacgataataccgaagtacagattgcagagtccatg
gattatgaagagacagatttacgatccatcatcgagggcgacagaagattcagggaagag
gagccgcttgcagattacggcttccagaagcaggaattccaggatgatgaactggtgagt
gttgaagaagaagaggatgtagacggtatcgacgattcttacgaggatttcgatgacgcc
gatttagacgaatcagacgaagaatag
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