Halorhodospira halochloris: HH1059_02090
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Entry
HH1059_02090 CDS
T06158
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
hhk
Halorhodospira halochloris
Pathway
hhk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HH1059_02090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhk03400
]
HH1059_02090
DNA repair and recombination proteins [BR:
hhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HH1059_02090
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HH1059_02090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_16
SMC_N
AAA_29
nSTAND1
UvrA_DNA-bind
AAA_23
RsgA_GTPase
AAA_21
AAA_25
AAA_22
AAA_18
NACHT
ATPase
AAA_33
nSTAND3
APS_kinase
Viral_helicase1
DnaJ_CXXCXGXG
Sigma54_activat
MeaB
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
BAU56886
UniProt:
A0A0X8X7A8
LinkDB
All DBs
Position
221452..227133
Genome browser
AA seq
1893 aa
AA seq
DB search
MSTQEPIRIRGACQHNLKNLDLDLPAGELIVITGVSGSGKSSLAFDTIYAEGQRRYVETF
SAYARQFLERMERPRVDSIEGVPPAIAIDQVNPVRTSRSTVGTMTELADHLKLLFARAAQ
PYCSGCGQPVRRDTPESIAEDLLTPDALGASSTERDPDTLASVEAERRIAVTFAVEVPDS
LSREQLLELLSSQGYTRIYAQEDNRIEVVQDRLRLDSSRRSRLLEALETALDKGRGHLRV
WQLGADREPQGEPLRYSSHYHCAQCDRAYAQPTAELFSFNSPVGACDHCRGFGRIMEIDP
DLVIPDPRLTLEQGAIKPFRGGFSVECQEDLLRAARRCGVPVDVPWQELTAEQRQWVWGG
EDRRGRGGRWYGVQGYFDYLERKSYKMHVRVQLSRYRAYRLCPECQGARLIAQALDFRLG
SRELADAVLEPQQRFRPKHMRVDEDTLRALPGLTLHDLATLPLGRLQRFFAELDLPPPLD
QAGATVLAEIRARVGFLNQVGLGYLTLDRQSRTLSGGEAQRINLTTALGTSLVNTLFVLD
EPSIGLHPRDVGRLIAILQQLRDAGNSLLVVEHGPQVMAAADRIIDMGPGPGERGGEVIF
NGTPGQLYGADTLTAAYLTGASRVERLRQAAGAASASAPVAENNADATPPCAGPWLRVRG
AAEHNLQEIDVAIPLQRLVCLTGVSGSGKSTLAEAVIYRGLLRQRGEAVETPGKCAAIEG
AEQLASVALIDQSPIGKSARSCPVSYTGALEPIRKLFAKQRLAKERGYSAGTFSFNSGNG
RCPSCKGSGFEHVEMQFLADVYLPCPDCAGRRFRAEVLEVEVVGAAGNAASIHAVLAMTV
AEAVSFFAASQEVKRHLQPLLDVGLGYLRLGQPVPTLSGGEAQRLKLAGHLAEQQSRAKG
RLKNSGKSQPEDEASAGTLFIFDEPTTGLHFADVQVLLQAFQRLLEAGNSLLIIEHNLDL
IANADWLLELGPTGGEGGGQLLASATPQQLAAAADTDTGRALVEYLQSRDTGAILAPSTA
EEGSAGWQIKETGHLSHSSVITIEQAREHNLNNIDLAIPRERFTVITGVSGSGKSTLAFD
LLFAEGQRRYLESLNAYARQLVQPAARPDVGAINGIPPTVAIEQRTSRGGYRSSVATQTE
IYHYLRLLYLRLGVQHCPECRVAISVQSAEAITAQLISAYRGETIELLAPLVVARKGIYK
ELAAWASSKGYSSLRVDGERLSTTAWPKLDRYREHDIDLPIGTIEVAVEREGQLAELLAL
ALAHGNGVVRVLAPERDDGREQVFATARACPSCGRGFAEPDPRLLSYNSRHGWCGECKGT
GLSVTDPDEASEEELERACPCPSCDGARLNPEARAISFHGYGIGEVTAWPVSRLREWLGA
LQLDGRGSAIGADVIAEINARLAFLEQVGLGYLTLDRAAPTLSGGEAQRIRLAASLGAGL
QGVCYILDEPTIGLHARDNAMLLGALRELSDAGNTVVVVEHDEETIRAAEHLIDIGPGAG
RYGGNVVAEGGVEDLIASEQSLTGRVLAKPPEHPSRPRRSAPAPGSLVIRGAKRHNLQDI
DVDIPLGRLVCVTGVSGSGKSSLVREVVEPNVRAILGLKKGQQRPRPNGCRQLSGTESLK
RVLEVDQTPIGRTPRSCPATYVGIWDAIRKLFAATEQARLRGWNAARFSFNTKGGRCEAC
SGQGTKTVEMSFLPDVKVPCESCAGTRFSEETRQVTYGGLSVDQVLALSIEQAREFFAAH
SRLEHILGLLSDIGLGYLSLGQPSPTLSGGEAQRLKLVTELAKARPVDAGAARGRSAAPT
LYLLDEPTVGLHIADVQRLTDMLHALVDGGHTVVVIEHNLDVIAEADHVIDLGPEGGSAG
GRVVASGSPEQLAAATTPTGQALRSLRLAEGLS
NT seq
5682 nt
NT seq
+upstream
nt +downstream
nt
atgagtacccaagagcctatccgcatccgcggagcttgccagcataacctcaaaaacctc
gacctcgatctcccagcaggcgaactgatagtcattaccggagtttccggatccggcaag
tcatcactcgccttcgataccatatatgcagaggggcagcgccgttacgtcgagaccttc
tccgcttatgctcggcagtttctcgagcgcatggaacggcctcgggtcgactccatagag
ggtgtcccccccgccatcgctatcgaccaggtcaatccggtgcgcacctcccgttcgacg
gtgggtaccatgaccgaactcgccgatcaccttaagctgctttttgctcgcgccgcgcag
ccctattgcagcggctgcggtcagccggtgcggcgcgatacaccggagtcgatcgccgag
gatttgcttacaccggacgcactcggcgcgagttcgaccgagcgggatccagatacactt
gcaagcgtggaggcggaaaggcgcatcgccgttacctttgccgttgaggtgcctgactca
ctatcccgagagcagttgctagagctcctttctagccagggttacacgcgaatctatgcg
caagaggataaccgcattgaggtagtgcaggatcgcctacgcctggatagctcaaggcgt
agcagactgctcgaggcgctcgagacagctctcgataagggccgcggccacctgcgcgtc
tggcagctaggggccgatcgtgagccgcagggcgagccactgcgctactccagccactat
cactgtgcgcagtgcgatcgggcatatgcgcagcccactgccgaactgttctcgttcaac
tccccggtcggcgcctgcgatcactgccggggcttcggccggatcatggagatcgacccg
gatttggtcattcctgatccacgcctgaccctggagcagggcgcaataaagccgtttcgc
ggtggcttctctgtcgagtgccaggaggatttgcttcgggcggcgcgccggtgcggtgtg
ccggtcgatgtgccttggcaggagcttaccgcggagcagcggcagtgggtttggggcgga
gaggatcgccggggacgcggcggacgctggtacggcgtacagggctatttcgactatctg
gagcgtaaaagctacaagatgcacgttcgggtacagctctcccggtatcgggcttatcgc
ctctgcccggagtgtcagggtgcccggttgattgcacaggcgctcgattttcgactgggt
tcgcgggaactcgcggatgctgtgctcgagccgcagcagcgcttccggccgaagcacatg
agggtcgatgaagataccctgcgggcgttgccgggactgacgctgcacgatctggcaacg
ttgccgctaggtcggctgcagcgcttttttgctgagctagatctgccaccgccgctcgat
caggcaggggcaacggtcctggctgagatccgcgcccgggttggtttcctcaaccaagtc
gggctgggctacctgaccctcgataggcagtcgcggactctctccggcggggaggcgcaa
cgcatcaatctgacaacggcgctcgggacttcgttggtaaatacgctgtttgtccttgat
gaaccttcgatcggactgcatccgcgcgatgtcggccggcttatcgcgatcctgcagcag
ctgcgcgatgccggcaattcgctactggtagtcgagcacggtccgcaggtgatggcggca
gcggatcgcatcatcgacatgggacccgggccgggcgagcggggcggagaggtaatattc
aacggcaccccggggcaactctatggcgcagacaccttgactgcagcttatcttactggg
gcaagccgggttgagcgcctgcgccaggcagccggtgcggctagtgcatccgcgccggtt
gcagagaacaacgccgacgcaacgccgccttgcgctgggccgtggctgcgggtgcggggt
gcggctgagcacaatctgcaagagatagatgtcgcgatacccctgcagcggcttgtctgt
ctgaccggggtatccggctccggtaaatcgacactggcggaggcggtgatctaccggggg
ctgctccgccagcgtggcgaggcggtagagacaccgggtaaatgcgctgccatagaaggc
gcggagcagctcgcaagtgtcgccctcattgatcaatcgcccatcggcaagagcgcacgc
tcctgcccggtcagctacaccggtgcgcttgagccgattcgcaaactctttgctaaacag
cggctagccaaagagcgcggctacagcgccggaaccttcagtttcaactccgggaatggc
cgctgtccgagctgcaagggctcggggtttgagcacgttgagatgcagtttctcgccgat
gtctacctgccctgtcccgactgcgccggccgacgttttcgggccgaggtcctcgaggtc
gaggttgtcggggccgctggcaatgcggcctcgattcacgctgtgctggcgatgaccgtt
gccgaggcagtaagctttttcgccgctagccaagaggttaagcggcatctgcagccgctg
ctcgatgtcggcctcggctatctgcgcctcgggcagccggtgccgaccctctccgggggt
gaagcgcagcggctcaaattagccggccacctcgccgagcagcaaagccgagccaaaggc
aggttaaaaaatagcggtaagagtcagcctgaggatgaggcaagcgcggggacgctgttc
atattcgatgagccgaccaccggcctgcactttgccgatgtccaagtgctcttgcaggcc
tttcagcgcttgttggaggcgggcaacagcttgctgatcatagagcacaacctggatctg
atcgccaacgccgactggttattagagctcggcccgacagggggtgagggtggtggccag
ttgcttgccagcgcaaccccgcagcaactggctgcagcggcggatactgacaccggccgg
gccctggtggagtacctgcaaagtcgcgatacgggcgcaatcctagcgccgagcaccgca
gaggaggggtctgcggggtggcagatcaaggagactggtcacttgtctcattcatctgtc
atcaccatcgagcaagcgcgcgagcacaatcttaataatattgatctcgctattccccgt
gagcggtttacggtgattactggtgtctcgggttccggcaaatcgaccctcgccttcgat
ctgctctttgccgaggggcaacgccgctatctggaatcacttaatgcctacgcccggcaa
ctcgtccaaccggcagcccgcccggatgtcggtgctattaacggcattccgccgaccgtg
gcgattgaacagcgaaccagtaggggagggtatcgctcgagcgtagcgacccagaccgaa
atctaccactacctgcgcttactctatctgcgcctcggggtgcagcactgccccgagtgt
agggttgcaattagtgtccagagtgccgaggccattaccgcgcagctgatctctgcctat
aggggggagactatcgagttactggcaccgctggtggtggcgcgcaagggtatctataaa
gagttggctgcctgggcaagcagtaagggctatagctcgctgcgggttgatggcgagcgc
ctgtcaaccactgcgtggcccaagcttgatcgctaccgcgagcatgatatcgatctgccc
atcggcaccattgaggtggcggttgagcgggaagggcagctggcagagttactggctcta
gccctagcacacggtaacggggtggtgcgggtgctagcaccggagcgcgatgatggtagg
gagcaggtttttgctaccgcgcgcgcctgcccgagttgcgggcgcggcttcgccgaaccg
gatccacggctgctctcgtataactcgcgccacggctggtgcggtgagtgtaaaggcact
ggtttgagcgtgaccgacccggatgaggccagtgaagaggagctcgagcgggcttgtccc
tgcccaagctgtgacggcgcgcgccttaatccagaggcccgagcaatatccttccacggc
tacgggattggtgaagtaaccgcctggccggttagccgtctgcgggagtggctgggtgcg
ctgcagctagatgggcgggggagtgccatcggggccgatgtgatagcggaaataaatgcc
cggctagcctttttggagcaggtggggctgggctatttgaccctggatcgggcagctcca
accctatctggaggagaggcgcagcggatccgcttggcagcgagtctcggtgccggtctg
cagggggtctgctacatcctcgatgagccgactatcgggctacacgctcgggataacgcc
atgcttctcggtgccctgcgcgagctcagtgatgccggcaacacggtggtagtggttgag
catgacgaggagacgatccgggccgccgagcatctaatcgatattgggccgggggcgggg
cgctacggcggcaacgtggttgctgagggcggtgttgaggatctgattgccagtgagcag
tcgttgaccggtcgagtgttggcgaagccgccggagcatccatcgcgcccccggcgaagt
gcacccgcgccaggaagtctggttatccgcggggcgaagcggcataacttgcaggatatc
gatgtcgatataccgcttgggcggctggtctgtgtcaccggggtctcgggatcaggcaaa
tctagcttggtgcgcgaggtcgtagagcccaatgtccgtgccatcctgggccttaagaaa
ggccaacagcgaccgcggccgaatggttgtcggcaactcagcggcaccgaatcgctaaaa
cgggtgctggaggttgatcagacgccgatcggtcgcaccccgcgttcttgtccggcgaca
tatgtaggcatctgggatgctatccgcaaactctttgcggctaccgagcaggcccggctg
cgtggctggaacgccgcccgtttctcctttaacactaagggcgggcgctgcgaggcgtgt
tcaggccaaggcaccaagacggtggagatgagttttctgccggatgtcaaagtgccctgc
gagtcttgtgctggaacgcgctttagtgaggagacgcgtcaggtcacttatggcggtctg
agtgttgatcaggtgttggcgttaagcattgagcaagcccgcgaatttttcgctgctcat
tctcgcctcgagcatatcttgggcttactcagtgatatcggcctcggttatctgagtcta
ggccagccgagtcccactttgtcgggcggcgaggcgcagcggctgaagttggtgaccgag
ttggctaaggcgcgtcccgtcgacgctggcgctgcgcgagggcggagtgcggcgccgaca
ctgtatctgcttgatgagccgacggtggggctgcatattgccgatgtccagcgcttgacc
gatatgctccacgccctagtcgatggcggccacacggttgtggttatcgaacacaacctc
gatgttatagccgaggccgatcacgttatcgacctcggcccggaagggggcagtgctggc
ggcagggtggtcgccagcggcagcccggagcagctcgccgcggccaccacgccaaccggc
caagcgctgcgctcacttcgccttgcggaaggcctcagctag
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