Halorhodospira halochloris: HH1059_08310
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Entry
HH1059_08310 CDS
T06158
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hhk
Halorhodospira halochloris
Brite
KEGG Orthology (KO) [BR:
hhk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhk03019
]
HH1059_08310
Enzymes [BR:
hhk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HH1059_08310
Messenger RNA biogenesis [BR:
hhk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HH1059_08310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
HA2_N
AAA_22
AAA_25
AAA_30
SLFN-g3_helicase
T2SSE
ResIII
FtsK_SpoIIIE
Helicase_RecD
nSTAND3
AAA_23
NACHT
SRP54
AAA_33
Motif
Other DBs
NCBI-ProteinID:
BAU57524
UniProt:
A0A0X8X8J5
LinkDB
All DBs
Position
879083..882862
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AA seq
1259 aa
AA seq
DB search
MSEINLEYDPQLPVVESRDKLLAALSEHQVVIVCGATGSGKSTQLPKMCLELGRGEERRI
AHTQPRRIAARSLAARLAQETRTTLGEEIGYKVRFTDQVSQQSRVKLLTDGMLLAEIQSD
RDLNQYDTVIIDEAHERSLNIDFLLGYLKQLLPRRPDLQVIVTSATIDPQRFSKHFDEAP
VFEVSGRTYPVEVRYRPFEERDGVDLPQAVVDGVAELRREGRGDVLVFLSGEREIRECAA
ALRKQAPPETEILPLYARLSSAEQQRVFSYGARQRVVLATNVAETSLTVPGIRYVIDSGQ
ARISRYSHRTKVSRLPVEPISQASADQRAGRCGREAPGICIRLYSEDDYQGRPPFTDPEI
LRTNLAGVILQMKALGLGEIDQFPFVEPPEQRYINDALRLLHELDAVDEKRRLTRCGRRL
ARIPADPRIARILLAARDFGVEREVLIIAAALSIQDPRERPLEAQEAADEAHARWQHPKS
DFLGFLNLWRDYQQHRQTLSRRKLTEWCREHFLAPQRMREWAEIRRQFAEMLREAGQHGA
GAGTRKDRIKTVGQASSGRAAQSPDRDSHHDDLEDYFEPIHRALLTGLVSQVARHKEERT
WLGARGVKLHIFPGSALAKRKPKWIVAAELVETRRLYARTVAEVRPEWIEAAAQNLVSRS
YSEPYWRKRAGQVVAEEQVALYGLILASGRRVNYARIDAQRAREIFIDSALVAGELRTRG
NFLRHNQDLIAQVEQLEAKARRRDLLVDREQLAAFYKSRVPEHICDAAAFEKWRRRVERK
DPQRLCMSSADVMRADAAQFSAQDYPDHLLINGMQLPLTYQLEPGSEEDGITVTVPLAAL
QQLTPEPFEWLVPGLLHEKVTALIRGLPKRLRRNFVPAPEYARAVLEALPRGEGSLIDAT
SRQLQRITGVEIPAGAFDDIELPAHLQISFQVVDRHGRELATGRDLAALRSELASRVSHE
LAASADTSSAAQVWQRSGIKQWDFAELPEAITLSEGGITFYAYPALCDEGDSVSLTLLES
FEAAERASYAGARRLFMLALPQQVRAMRKLEEFKQLRLQYRGLGSDEELREEIVQAAFDR
SFLSSGLPRDRESFEQQLAAGRAELMAQAQQLAADIETVLSIYQQLRKELKGLNSPALLE
SLRDIEEHLRSLVYPGFIANTPAEQLTKLPRFLRALQRRVEKLKVNPTKERDSLRCIRPW
HEKIQQRLAQRSDRGVPDPHLEQLRWLLEEYRVSLFAQDIGVQEKVSEKRLQKLWREVV
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgagattaatctggagtacgatccacagcttccggttgttgagtcacgcgataag
ctgcttgctgctctgagcgagcaccaggtagtgattgtctgtggcgcaacaggttcgggc
aaatctacccagctgccgaagatgtgtttagagctaggccggggagaagagcggcgtata
gcccacacccagccgcggcgtattgctgcccgctcgctggccgcgcgtctagcgcaggag
acccgaactactcttggcgaggagatcggctacaaagtccgtttcaccgatcaggttagt
cagcagagcagggtcaagctgctgaccgacggtatgctgctcgccgagatacagtcggat
cgagacttaaatcagtatgatacggttatcatagatgaggcccatgagcgcagcctcaac
atcgattttttgctcggttatctcaagcaactcctgcctaggcgtcccgatctgcaggtt
atcgtaacctcagcgaccattgatccgcagcgcttttcgaaacactttgacgaggcccct
gtgtttgaagtctcagggcgcacatatccggtagaggtgcgctatcgaccattcgaggag
cgcgatggggtcgatttgcctcaagcagtggtcgacggcgtagctgaactgcgccgtgag
ggcagaggtgatgtgctggtcttcctctccggcgagcgcgagatccgcgagtgcgccgcg
gcactgcgcaaacaggcaccgccggagacagagatattacccctctatgctcgcctgtcg
agtgccgaacagcagcgggtcttcagctacggcgcaaggcagcgggtggtgctggccact
aatgtcgctgaaacgtcccttacggtcccggggattcgctatgtcatcgattccgggcag
gcgcgcataagtcgctatagccaccgcactaaggtctcccggctgccggtcgagcccatt
tctcaggccagtgctgatcagcgggccgggcgctgcggtcgcgaggccccggggatttgc
atacgcctgtatagtgaggatgactaccagggtcggccaccctttaccgacccggagatc
ctgcgcaccaatctcgccggggtcatcctccagatgaaggccctggggttgggtgaaatt
gaccaattccccttcgtcgagccgccggagcagcgttatatcaacgatgccttgcgcctg
ttgcatgagcttgacgcggtcgatgaaaagcgccgccttacgcggtgtggccggcgtctg
gcgcggataccggctgacccgcggattgctcggatcctactagcggcgcgtgacttcggg
gtcgagcgcgaggttctgataatagccgctgcgctatcgattcaggatccgcgggaacgt
cccctggaggcacaagaggcggctgatgaggcgcatgcccgttggcagcatccgaagagc
gattttctcggtttcctcaacctgtggcgagactatcagcagcaccgtcaaaccttgtca
cggcgcaagttgactgagtggtgccgtgagcatttcctggcgccacagaggatgcgcgag
tgggccgaaatacgtcgtcaattcgccgagatgttgcgtgaggccgggcaacatggtgct
ggagcaggtactcgtaaggatagaatcaagacggtagggcaagcatcatcaggcagagca
gcacaaagcccagatcgagacagtcaccatgatgacttagaggattactttgagccgatt
caccgggccttactaactggcctggtaagtcaggtggcgcggcataaggaggagcggact
tggctcggggcgcgcggggttaagctgcatatcttcccggggtcggcgttggctaagcgc
aagccgaagtggatcgtagctgccgagctggttgagacgcgacgactctatgcgcgcact
gttgctgaggttcgtccagagtggatagaggctgcggcgcaaaacctcgtctcccgcagt
tatagcgagccatactggcgcaaacgggctggacaggtggtggctgaggagcaggtggcg
ctgtatgggctcatccttgcctctgggcgccgggttaactatgcccgcatagatgcgcag
cgtgcccgcgagatatttatcgactccgccttagttgccggcgagttgcgcactcgcggc
aattttctgcgccataatcaggatctaattgcgcaggttgagcagctcgaggctaaggcg
cggcggcgtgacttgctagtcgatagggagcaactcgctgcattttataaatcccgtgtt
cccgagcatatttgcgatgcagcggcgtttgaaaagtggcggcgccgtgttgagcgcaaa
gatccacagcgcctatgtatgagcagcgctgatgttatgcgtgctgatgcggcgcagttt
agtgcccaggactatccggatcatctgctaataaatggcatgcaactgccgttgacctat
cagcttgaaccgggcagtgaagaggacgggattacggtgacggtgcctctggccgcgctc
cagcagttgaccccggagccattcgagtggcttgtgccaggcctattgcacgagaaggtt
acagctctgattcgtgggctacctaagcgtctgcggcgcaacttcgtgccggctccggag
tatgctcgggcggtgttagaggcactgccccggggcgagggctcgttaatcgatgctacc
tcgcggcagttacagcggattaccggggttgagatacctgctggggcttttgatgatatc
gagttaccggcgcacctgcagatatcctttcaagtcgtagatcggcatggtcgggagttg
gctacagggcgcgatctagcggctctgcgcagtgagttggcaagccgggtcagtcatgaa
ctggcagcaagcgcggacactagctctgcggcccaggtctggcaacgcagtggcatcaag
caatgggactttgccgagttgcccgaggcgataaccctgagcgagggcggcataacattt
tatgcctatccggcgctatgtgatgaaggtgattcggtaagcctgacgttactcgaatca
ttcgaggcggcggaaagggcgtcttacgctggggcccggcgcttgttcatgctggctttg
ccgcagcaggtcagggccatgcgtaagcttgaagaatttaagcagctgcgtttgcagtat
cgcggcttaggcagcgacgaagagttgcgtgaagagattgttcaagcggcatttgatcgc
agctttctgagctccggtttaccccgtgatagggaaagctttgagcagcaacttgctgcc
gggcgtgctgagctgatggcgcaggcgcagcagctggcggctgatattgaaacagtcctc
agtatctatcagcagttgcgcaaggagctcaagggcctgaatagtccggccctattagag
agcttgcgggatatagaagagcatctgcgcagtctggtctatcccggttttattgccaac
accccggccgagcaattgacaaaattgcctcgttttctgcgcgctttacagcgccgggtc
gagaagctgaaagtcaatccaaccaaggagcgtgactcgctgcgctgcattcgtccctgg
catgagaagattcaacagcgccttgctcaacgctctgatcgtggtgtccctgatcctcac
ttagagcagttacgctggttgctcgaggagtaccgtgtctcccttttcgctcaagatatc
ggggttcaggagaaggtttcggagaagcggctgcaaaagttatggcgcgaggttgtgtaa
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