Halorhodospira halochloris: HH1059_22330
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Entry
HH1059_22330 CDS
T06158
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hhk
Halorhodospira halochloris
Pathway
hhk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hhk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HH1059_22330 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhk03021
]
HH1059_22330 (rpoB)
03400 DNA repair and recombination proteins [BR:
hhk03400
]
HH1059_22330 (rpoB)
Enzymes [BR:
hhk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HH1059_22330 (rpoB)
Transcription machinery [BR:
hhk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HH1059_22330 (rpoB)
DNA repair and recombination proteins [BR:
hhk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HH1059_22330 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
BAU58941
UniProt:
A0A0X8XBK0
LinkDB
All DBs
Position
complement(2443257..2447402)
Genome browser
AA seq
1381 aa
AA seq
DB search
MPYSFTEKKRIRKDFGKLPNILDVPYLLATQIDSYRQFLQEDIAEEKRDHEAGLEGAFRS
VFPIRSHSGNAELQYVSYSIGEAPFDVKECQNRGLTYAAPLRMLVRLAIYDKDSGAVKDV
KEQEVYMGELPLMTSTGTFVVNGTERVIVNQLHRSPGVFFDHDKGKSHSSGKHLFSARVI
PYRGSWLDFEFDPKDSIYVRIDRRRKLPATILLRALGYTNEDILAEFFETDRYELRGDGL
VVLDLIPERLRGETANFDINVGEETIVQSGRRITARHIKQLQKSGVDQLEVPEDYLVGKI
LAHDVVDPESGEVLAEANTGLTPELIQELIDAGIREVNTLYINDLDRGPYMSNTLAIDPT
RTQMEALVEIYRMMRPGEPPTKDAAENLFYSLFFTSDRYDLSPVGRMKFNLRVGYDNETG
PGILYDSRYFKLLAEDDQSAAELVDRLGDDSDILAVLRELINIRNGNGQVDDIDHLGNRR
VRSVGEMAENHFRVGLVRVERAVRERLSLAESEGLMPQELINAKPVAAAIKEFFGSSQLS
QFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHSTHYGRVCPIETPEGPNIGLI
NSLAVYARPNRYGFLETPYRRVEDGKVTDQVDYLSAIEESRYVIAQANARVDENGLLADD
LISCRHQNEFTMATAERVQYMDVSPRQIVSVAASLVPFLEHDDANRALMGSNMQRQAVPT
LRAEKPLVGTGIERTVAQDSGVIVTAERGGVVEQADSNRIVVRVKDDETAAGEPGVDIYN
LTKYTRSNQNTCFSQKPLVYAGDHVERGDALADGPSTDLGELALGQNMLVAFMPWNGYNF
EDSILVSEKLVKEDRYTSVHIEELTCVARDTKLGTEEITSDIPNVSESALSRLDESGIVY
IGAEVKSGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGMDGTVIDVQ
VFTRDGVEKDERARSIEREEIARIRQDLNDEARIFEDDAYARLERLLVGKIAEGGPQGLG
SGAEIQQDYLDNLSRERWFEIRVRDEEVNQQLEAVRHQLEAQNQRLEKRFEEKKAKITAG
DDLSPGVLKTVKVHLAVKRRLQPGDKFAGRHGNKGVISMIVPEEDMPFMDDGTPVDIVLS
PLGVPSRMNVGQVLETHLGWASKGLGEKIAGMLREHSNVEQLRAFLSEIYNISGRKEELD
QLSEEDIKTLCNNLKSGVPVATPVFDGANEDEIMRWLRLAGLPESGKTRLYDGRTGDAFD
RPITVGYMYMLKLNHLVDDKVHARATGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG
AAYTLQEMLTVKSDDVTGRTKMYKNIVDGDHRMEAGMPESFNVLVKEIRSLGINIELERD
D
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgccgtattcgttcaccgagaagaagcgcatccgtaaagatttcggtaagctcccaaac
atcctcgatgtgccgtatttgcttgctacccaaatagattcctatagacaattccttcag
gaagatatagctgaagagaagagggatcatgaggcaggtttagagggggcattcagatcg
gtattcccgattcgcagccactccgggaatgccgagcttcagtatgtttcatacagcatc
ggcgaggcacctttcgacgttaaggagtgtcaaaaccgtggactaacgtatgctgctcca
ttgcgcatgcttgtacgtcttgccatctacgataaagatagtggcgctgtcaaagacgtc
aaagagcaagaggtttatatgggggagttgcccctgatgacctcaacgggcacctttgtc
gttaatggtaccgaaagagtaatagttaaccagttgcaccgctcgcctggtgtgtttttc
gaccatgataaaggcaagagtcactcatcaggaaaacatctgttctcagcccgagttatt
ccttaccgtggctcttggctagattttgaatttgaccccaaagattccatctatgtccgc
attgatcgtaggcgcaaattgccggcaacgatattgttgcgggcgctggggtatactaat
gaagacatactagcagaattctttgagacagatcgctatgagctgcgtggggatggcttg
gtcgtcttggacctcatccctgaacggctgcgtggtgaaacggcaaactttgatattaat
gttggcgaggagaccattgtccaatctgggcgccggattaccgctcggcatatcaaacag
ctgcagaagtctggtgtagatcagctggaggtacctgaagattatctggtcggcaagatc
ctcgctcacgatgtcgtagacccggaaagcggcgaagtattagctgaggctaacacgggg
ctaactcctgaacttattcaggagctgatcgacgccggtatacgtgaggttaatacctta
tacataaatgatctcgaccgcgggccctatatgtccaataccctggcgatcgatcctacc
cgcacacagatggaggccttggtagagatctatcgaatgatgcgcccgggtgagccgccg
actaaggatgcggcagaaaatctcttttatagtcttttctttaccagtgatcgttacgac
ctttctccagtagggcgaatgaagttcaacctaagggtcgggtacgacaacgaaacgggc
ccagggattctctatgacagcagatatttcaagttactggctgaagatgatcaatctgct
gcagagcttgtcgatcgactaggtgatgactctgatatcctggctgttttgcgcgaactg
ataaacatcagaaatggcaatggtcaggtcgatgacattgaccacctaggcaacaggagg
gtccgttcggttggcgagatggccgagaaccattttcgagtaggtttggtcagggtcgag
agggcagtgagagagcgcctgtcgcttgccgagagcgagggcttgatgccccaggaattg
attaatgccaaacctgtggcagcagcaatcaaagagtttttcggttcatcgcagctctct
cagtttatggaccaaaacaacccgctctctgaggtgactcacaagcggcgcatatccgct
ttgggcccaggtggtttgactcgggagcgtgcaggattcgaagtgcgtgatgtccattca
acgcactatggtagggtttgcccgatcgagactcctgaaggaccgaatatcggcttgatt
aactccttggccgtttacgctagacctaaccgctatggtttcttggaaaccccttatcgc
cgggttgaggatggtaaggtcactgaccaggtcgattatctatcggcaatagaggagtcg
cgttatgttattgcgcaggcaaacgctcgggtagacgagaacggtctccttgccgatgac
ttgatctcatgccggcatcagaacgagttcaccatggcgacggccgagcgggtccagtat
atggacgtttcacctcgccagatagtctctgttgctgcctcgttggtccccttcctcgag
cacgatgacgctaaccgcgccttgatgggttctaacatgcagcgtcaggcggtgccgacg
ttacgtgccgagaagcccttagtgggtacgggaatcgaacggactgttgcacaggactca
ggagttattgttactgccgagcgtggtggggtagttgaacaagcggattcaaatcgcatc
gtagtccgagtaaaagatgacgagacagccgcaggtgaaccgggggttgatatttacaac
cttaccaagtacacccgctccaatcagaatacgtgctttagccagaaaccattagtttat
gctggtgatcacgtcgaacgcggcgatgctttggctgatgggccctcaacagacctgggt
gaattggcactagggcagaacatgctagtggcctttatgccctggaacggctacaacttt
gaggactcaatcctcgtatccgagaagctggttaaggaagaccgttatacctcggtgcat
attgaagaactcacctgtgtcgctcgtgatacaaagctaggcactgaagagattacttca
gatataccaaacgtatctgagtcggccctttcaaggttggatgagtccgggatagtttat
ataggcgccgaggtcaagagtggagatatcctagtaggtaaggtcacgcctaagggtgag
actcagcttacgcctgaggagaaattgctgcgagcaatatttggtgaaaaggcctctgac
gtaaaggatacctcactgcgcgtacctacgggcatggatggcacagttatcgacgtgcag
gtctttacccgtgatggcgttgagaaagatgagcgggcgcgatcgatagagcgagaagag
attgcacgcattcgccaagacctcaatgacgaggcacgtatcttcgaggatgatgcttat
gctcgcctggagcgactgctggtcggcaagatagctgaaggcgggccacaggggcttggc
agcggcgccgagatacaacaggattacttggataatctctcgcgggagcgctggttcgaa
atccgcgtgcgtgatgaggaagtaaatcagcagcttgaggccgtgcgccatcaactcgag
gcgcagaatcagaggctggaaaaacgcttcgaggagaaaaaggccaagataactgccggc
gatgatctttcccctggggttctcaagacggttaaggtccacttggctgtgaagcgtcgt
ctccagcccggcgataagtttgcaggccgccatggtaataaaggcgttatctcgatgata
gtgcccgaggaggacatgccgtttatggatgacggcactccggtggatatcgtgctgtcg
cccttaggcgtgccttcaagaatgaatgtgggacaggttttggagactcatctgggatgg
gcatctaaaggcctcggcgaaaaaatcgcggggatgttacgggaacactctaatgtagag
caactgcgcgcattcctaagtgagatctacaacatatcgggtaggaaggaggagcttgat
cagcttagtgaagaggatataaagactctctgcaacaaccttaagagcggcgttcctgtt
gctacccccgtgttcgacggcgcaaatgaagatgaaataatgcgctggctgcgccttgcc
ggtctaccagaatcgggcaagactagactgtatgacggtagaactggtgatgcctttgac
cgaccaattacagtggggtacatgtacatgctcaaactcaaccacttggttgacgataag
gtgcatgctcgtgccacagggccttactcactggttacccagcaaccactgggcggtaaa
gcacaatttggtgggcaacgtttcggagagatggaggtttgggcacttgaggcttatggt
gccgcctacaccttgcaagagatgttgaccgttaagtcagacgatgtgactggccgtacc
aagatgtataagaacatcgttgatggtgatcaccgaatggaggctggcatgccggaatca
tttaatgtcctggtcaaggagatcaggtcgctcggcatcaatattgagcttgaaagagat
gattga
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