Halobacteroides halobius: Halha_0385
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Entry
Halha_0385 CDS
T02401
Name
(GenBank) DNA-directed DNA polymerase III PolC
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hhl
Halobacteroides halobius
Pathway
hhl03030
DNA replication
hhl03430
Mismatch repair
hhl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Halha_0385
03430 Mismatch repair
Halha_0385
03440 Homologous recombination
Halha_0385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhl03032
]
Halha_0385
03400 DNA repair and recombination proteins [BR:
hhl03400
]
Halha_0385
Enzymes [BR:
hhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Halha_0385
DNA replication proteins [BR:
hhl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Halha_0385
DNA repair and recombination proteins [BR:
hhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Halha_0385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AGB40380
UniProt:
L0K771
LinkDB
All DBs
Position
393351..396752
Genome browser
AA seq
1133 aa
AA seq
DB search
MSNFVHLHTHTEYSLLDGAIRIDDLVQQAKEYDMPAVAITDHGVLYGAIDFYQQLKEAGI
KPIIGCEVYVTEDYQQKQPRNRKLNHLVLLAENKQGYKNLLKLVSQSFLEGFYYKPRVDK
ELLAKYSEGLICLSSCLAGEVATLIQNRQFEQAKEVALDYQNIFGPNNFFLEMQDHGLAE
EKQVNTELVKLSRELDIPLVVTNDVHYLKQDDATVHDILLCIQTGKDVTDEDRLQFPNQE
FYFKSPQEMQDLFSDYPQAIENTVKIAQRCNLELDFEQTLLPDYQVPQGDTLESYLRKVA
YQGLAEKYEQITPEIEERLEYELEIINQMGYPAYFLIVRDFVRYAKENDIIVGPGRGSAA
SSLVSYALDITNIDPLEYDLLFERFLNPARVTMPDIDIDFCYERRDEVIDYVTKKYGPDK
VAQIITFGTMAAKAAVRDVGRVLGVSYNKTDKVAKAIPDNLGIDIKGALSKSEELEELYQ
SDKEVKEIVDYAHGIEGLPRHASTHAAGVVITKEELTNYTPLYQNGGEVTTQYAMDDLES
LGLLKMDFLGLRTLTVINKTLDLIKETQGEEIELAQISFTDQKVYDLLSSGNSLGVFQLE
STGMRRLIAKLKPEDIEDIIALLALYRPGPLGSGMVEDYIARRHDEQEVEYPHPDLKEIL
GPTYGVILYQEQVMQIVQKIAGYSLGQADILRRSMGKKKPEVMKKHRDIFINGNDDIAGA
VNNGYSKELAKELFELIEHFGGYGFNKAHSAAYAHVSYYTAYLKAHYPVEFMAALLTSQI
ENSDKVAKYINEVRRMGFEVLPPNINASYFGFTVDSGQIRFGLQGVKHVGAKAIEEIITA
RKEEKFKSLSDFCQKVDLSKVNQRVVESLIKAGAFDSLGDYRSQLLNVLPEVFSQAHKMQ
KEQSNGQTSFSDLFTEDKEFVATDIQLPEIKEFANQKLLSLEKEMLGLYLSGNPLEDILP
QLKERRDSTIQSLEIGEQEVVTGGIITKKKEVITKNQRQMAFISLKDETDKLDAIIFPDV
YQKYQELVIEDQGVLIKGQVNQEEKLIAQQIIDVTDSVADEVKVVHLQLEDPTLTTIDNL
KDILVNYSGEKKVYLHLVIKEQRISIKLDSKYWVQATNELSKELKSIGAKHFF
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgtctaactttgttcatcttcatactcatactgaatatagtctgctagatggggcaatt
agaatagatgacttggttcaacaagcaaaagagtatgatatgccagcggtagcaattact
gaccatggggtactgtatggtgcaattgatttttatcaacaacttaaagaagcagggatt
aaacctatcattggttgtgaggtatatgtgactgaagattatcaacaaaaacaacctcgt
aatagaaaattaaatcacttagtattattagctgaaaataagcaagggtataaaaatttg
ttaaagttagtttcacaaagttttttagaagggttttattataaaccacgagttgataaa
gaattattagctaagtatagtgagggtttaatttgtttaagtagttgtttagctggtgaa
gtagcaactttaattcaaaaccgacaatttgaacaagctaaggaagttgcattagattat
caaaatatatttgggccaaataacttctttttagagatgcaagatcatggtttagccgaa
gaaaagcaagttaatacagagttagttaaattaagtcgagagttagatataccattggta
gtgaccaatgatgttcattatttaaagcaagatgatgctacagtacatgatatcctgcta
tgtattcaaactggtaaggatgtaacggatgaagatagattacaatttcctaatcaagaa
ttttattttaagtctccacaagaaatgcaagatttattttctgactacccacaagcaatt
gaaaatacagttaagattgctcagcgttgcaatcttgagttagattttgaacaaactcta
ctgcctgattatcaagtaccccagggggatacacttgagtcttatttacgtaaggtagct
taccagggtttagcagagaagtatgagcaaataactcctgaaatagaagaaagattagag
tatgagttagaaattatcaatcaaatgggctatcctgcttattttttaattgtgcgggat
tttgttagatatgctaaagagaatgatattatagttggcccagggcgaggtagtgctgct
tctagtttagtttcttatgcgttagatattacaaatatagatcctttagagtatgattta
ttatttgaacgatttttaaatccggcccgagtaacaatgccggacatagatattgatttc
tgttatgagcggcgggatgaagtaatagattatgtaactaagaagtatggcccagataag
gtagcccagattattacttttggaacaatggctgctaaggcagcagtcagagatgtagga
cgagtcttaggagtcagttataataagaccgataaggtagctaaagcaattcctgataat
ttagggattgatattaaaggggctttgtctaaatcagaagaattagaagagttatatcaa
tcagataaagaagttaaagaaattgttgattatgctcatggtattgagggattacctcgc
catgcttctactcatgctgcaggagtagtaattactaaagaagaattgactaattatact
ccactatatcagaatggtggtgaagttactacccagtatgctatggatgatttggagtca
ttaggcttattaaagatggattttttaggtttaagaactctaacagtaattaataagaca
ctagatttaataaaagagactcaaggagaagaaattgagttagctcagatttcttttact
gaccagaaagtatatgatttattaagtagtgggaatagtttaggagtatttcaattagaa
agtactggtatgagacgtttaattgctaagttaaagccagaagacatagaagatattatt
gctttactagctttatatcgaccagggcctttaggaagtggaatggtagaggattatatt
gctagaaggcatgatgaacaggaagtagagtatcctcatccagatttaaaagaaattcta
gggccaacttatggtgtaattttataccaggagcaagtaatgcagattgtgcaaaaaatt
gcagggtattctcttggtcaagctgatattttgcgtcgatcaatgggaaagaaaaaacct
gaggttatgaagaaacaccgagatatttttattaatggtaatgatgatattgctggagca
gtaaacaatggttatagcaaagagttagctaaagagttatttgaactgattgaacacttt
ggaggttatggctttaataaggctcatagtgcagcttatgctcatgtttcatattatact
gcttacttaaaagctcattatccagttgaatttatggctgcgttattaactagtcagata
gaaaatagtgataaggtagctaaatatatcaatgaagtaagaaggatgggctttgaagta
ctacctcctaatataaatgctagttactttggttttacagttgattctggacagattaga
tttggcttacaaggagtcaagcatgtaggggccaaggctattgaagaaattattacagct
cgtaaagaagagaagtttaaaagtttatctgacttttgccaaaaggttgatttaagcaag
gtcaatcaacgtgtagtagagagtttgattaaagcaggagcttttgattctttaggtgat
tatcgttctcaattgctcaatgtattacctgaagtttttagccaagctcataaaatgcaa
aaggaacaaagtaatggtcaaactagcttttcagatttatttacagaggataaagagttt
gtagctactgatattcagttaccagagattaaggagtttgctaaccagaagttattatct
ttagagaaggaaatgttaggtttatatctgtctggtaatcctttagaagatattttaccc
caattaaaagaaagaagagatagtacaattcaaagcttagaaattggagagcaagaagtg
gttacaggaggaataattactaaaaagaaagaggtaataactaagaatcagcgccagatg
gcttttatatcactaaaagatgaaacagataaattagatgcaattatttttccagatgtt
tatcaaaagtaccaagaattagtgattgaagatcaaggggtgttaattaagggccaagta
aatcaagaagaaaaattaattgcgcagcaaataatagatgtaactgattcagtagcagat
gaagttaaggtagtccatctacaattagaagatccgactttaactacaatagataattta
aaagatatactagttaattattctggagaaaagaaagtatatctacacttagttattaaa
gagcaaagaattagtataaaattagatagtaagtactgggtacaagcaactaatgaatta
agtaaagagttgaaaagtataggtgctaagcacttcttttaa
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