KEGG   Halobacteroides halobius: Halha_0880
Entry
Halha_0880        CDS       T02401                                 
Name
(GenBank) primosomal protein N''
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
hhl  Halobacteroides halobius
Pathway
hhl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hhl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Halha_0880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hhl03400]
    Halha_0880
Enzymes [BR:hhl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Halha_0880
DNA repair and recombination proteins [BR:hhl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Halha_0880
SSDB
Motif
Pfam: PriA_3primeBD PriA_C DEAD ResIII Helicase_C Zn_ribbon_PriA ARM_LIN_2nd AAA_19 ATPase_2 TrwB_AAD_bind zf-H2C2_5 PIF1 Zn_ribbon_6 T2SSE zf-C2H2_ZFHX3
Other DBs
NCBI-ProteinID: AGB40846
UniProt: L0K773
LinkDB
Position
861320..863545
AA seq 741 aa
MKYVSIIVDLPVKQVNQTFSYHIPEKLEETIGLGKKVIVPFGPRKIEGYIVEIKKQVEFE
TKPIIKVASDYSLFDQELLELAEWMANYYQCYLISALKAIIPSGKQRVKTKRVVNLAQSD
QETNEIISQLEKRAPKQAAVLFYLVKNPAQQLITTNLAKKVNTSSGTIRRLFKKGLIDYN
KEEVKRIPYQDTNFKKTTPLAPTPEQEVALSEIKAAINSQLDTTFLLKGVTGSGKTEVYL
QSISEVLSQGQEAIVLIPEIALTPQTIARFKGRFGKQVAVLHSQLSSGERFDEWRRIKEG
KAKIAVGARSAIFAPFSNLGLIVIDEEHETTYKQEDHPKYHAREVAVKRAKLNQAVTILG
TATPSLESYYRAQKEEYKLLELSKRIEDRPLPKVELVDMRQELEAGNKQMLSRSLEKEIK
ARLEVDEQVIIFLNRRGFSTFVQCRKCGYVMECDECDVSLTYFSQSQILKCNYCDFTTKI
PEECPDCGSSYIKYFGVGTEKVERALQEIFPEANIARMDRDTTTKKGAYQRILSSFSAGE
IDILVGTQMIAKGHDYPNVTLVGVITADTALNLPDFRASERTFQLLAQVAGRTGRGAKAG
QVIIQSYTPEHYSIQQAKEHDYQSFYEQEIIFREEMEYPPVTHLINIIVSDKSEDKTIKV
AQRLGEIINAKLKDTADKQLLGPVQAPLSKIRGEYRWQLLLKGRNLEELRQLNQMSLQEL
EEVKELKSVKISIDIDPIGVL
NT seq 2226 nt   +upstreamnt  +downstreamnt
atgaagtatgtatctattatagttgatttaccagttaaacaagtcaatcaaacctttagt
tatcatataccagaaaaattagaggaaacaataggattaggcaagaaagtaattgtacct
tttggcccgcgcaaaattgaaggatatatagtagagattaagaaacaagttgaatttgag
accaaaccaattattaaggtagcaagtgattattcattatttgatcaagaattactagaa
ctagcagagtggatggctaactattatcaatgttatttgatttctgctttaaaggcaatt
attcctagtgggaagcagcgggttaagactaaacgagttgttaacttggcccaatcagat
caagagacgaatgagattatctctcagttagaaaagagggctcctaaacaagcagcagtt
ctattttatttagtaaaaaatccagcccaacaattaattactactaatttagctaaaaaa
gtgaatactagttctggtaccataaggagattatttaaaaaaggtctaatagattataat
aaagaagaagtaaagagaattccttaccaagatactaattttaaaaagacaactccttta
gctcctacgccagaacaagaagtagcactatctgaaattaaagcagctattaatagtcaa
ttagatacaacttttttattaaaaggagttactggtagtggaaagactgaggtatattta
caatcaatttctgaggttcttagccaaggccaagaggcaattgtcttaatccccgagatt
gctttaacccctcaaactattgcccgctttaaaggacgttttggaaagcaagtagctgtt
ttacatagtcaattatcttctggggaacgatttgatgaatggcggaggattaaagaggga
aaggctaagattgctgttggagctcgttcagcaatttttgctccttttagtaatttaggc
ttaattgttattgatgaagaacatgaaacaacttataaacaagaagatcatcctaagtat
catgctcgggaagtagcagttaaaagggccaagctaaatcaagcagtaactattttagga
actgcaactccttctttagaatcttattatcgggctcaaaaggaagagtacaaactattg
gagttatctaaacgaattgaagatcgtcctttaccaaaagtagaattagttgatatgcgc
caagagttagaggctggtaataaacagatgttaagtcgcagcttagaaaaggaaataaaa
gcaagattagaggtagatgaacaggtgattatctttcttaatcgacgtggtttttctaca
tttgtgcagtgtaggaagtgtggttatgtgatggaatgtgatgaatgtgatgtttcacta
acttatttttctcaatctcagattcttaagtgtaattattgtgattttacaacaaagatt
ccagaagaatgtcctgattgtggaagtagttatattaaatactttggagtaggaactgaa
aaagtagaacgagctttacaggaaatatttcctgaggctaatatagctcggatggatcga
gatacaacgactaaaaaaggggcttatcagcgaattctaagctcgttttcagctggggaa
atagatattttagtaggaactcagatgattgctaaaggacacgattatcctaatgttact
ttagtcggggttattactgctgatactgctttaaatctacctgattttagggcaagtgag
aggacatttcagctgttagctcaagtagctggtcggactggtcgaggagcaaaagcaggg
caagtaataattcaaagttatacccctgaacactacagtattcaacaagctaaagaacat
gattaccaaagtttttatgaacaagaaattatctttagagaagaaatggagtatcctcct
gtgacccatttaatcaatattattgtaagtgataaatcagaggacaaaacaattaaggta
gctcaaagattaggggagattattaatgctaagttaaaagatacagcagataagcagttg
cttggccccgtacaagctccattatctaaaatcagaggagaatatagatggcagttatta
cttaaaggacgaaatttagaagagttaagacagcttaatcaaatgtctttgcaggagtta
gaagaagttaaagagcttaaaagtgttaaaattagtattgatatagacccaataggagtg
ctataa

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