Halobacteroides halobius: Halha_1126
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Entry
Halha_1126 CDS
T02401
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hhl
Halobacteroides halobius
Pathway
hhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Halha_1126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhl03019
]
Halha_1126
03009 Ribosome biogenesis [BR:
hhl03009
]
Halha_1126
Enzymes [BR:
hhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Halha_1126
Messenger RNA biogenesis [BR:
hhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Halha_1126
Ribosome biogenesis [BR:
hhl03009
]
Prokaryotic type
rRNA helicases
Halha_1126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
DUF2119
Sp-DndD
Motif
Other DBs
NCBI-ProteinID:
AGB41075
UniProt:
L0K944
LinkDB
All DBs
Position
1124829..1126412
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AA seq
527 aa
AA seq
DB search
MQKKKFTELNLSPEINKAVEDMGFEEATPIQSQAIPHLLTGKDVIGQAQTGTGKTAAFGI
PVLEKVDPNSKDVQALILCPTRELAIQVSEELGRLGKYKNKITTLPIYGGQSIGRQIKAL
KKGVQVVIGTPGRLMDHMRRGTLKFDNLKMAILDEADEMLNMGFRDDIETILDGIKGKKQ
TIFFSATMPKPILKLRKKYQHNPEIVKVVHKKLTVPNIEQAYFEVNRSNKLNALSRLIDM
YDPKLSLVFCNTRKQVDELVIQLQARGYFVDGLHGGLSQPQRDRVMNKFKTATIEILVAT
DVAARGIDINDIEMVFNYDIPQDEEYYVHRIGRTGRAGRKGKAFTFVSGKEIYKLKSIQK
YTKTKIKRKKIPSASDVEEVKLGLVLDSVADIIEADDLTKETRLIEEQLEEDYVSIDIAA
ALLKLVREEETQTDTENVEYFGNTGAEPGMVRLFINIGKKQHISPGDIVGAIAGETNISG
DLVGLIDVYDRYSFVEVPKEHGKEVLKIMKNTTIKGKSIDIEPANPK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagaaaaagtttacagaattaaatttatctccagagataaataaagcagtagag
gatatgggatttgaggaagctactccaattcaatctcaagcaattcctcatctgctaaca
ggaaaagatgtgatcggacaagctcaaaccgggacaggaaagacagctgcttttgggatt
cctgttttagagaaggtagaccccaatagtaaagatgtacaagctttaatcttatgtcct
actagagagttagctattcaagtatccgaagaattagggagattaggaaagtataaaaat
aagattactactttaccaatttatggtggtcaatctattggtcggcagattaaagcctta
aaaaagggagttcaggttgtaattggtactccagggcgtttaatggatcatatgagaaga
ggaactctaaagtttgataacttgaagatggctatcttagatgaagcagatgaaatgtta
aatatgggctttagagatgatatagaaacgattttagatggtattaaaggaaaaaaacaa
actattttcttttctgctacaatgcctaaacctattttaaaattaagaaagaaatatcaa
cataatcctgaaatagtaaaggtagtgcacaaaaaattaactgttccaaatattgaacag
gcctattttgaggttaacagaagtaataagttaaatgctttatcaaggttaattgatatg
tatgatcctaaattatcattggtattttgtaatacaagaaagcaagtggatgaacttgta
attcagctacaagctagaggttattttgtggatggattacatgggggattaagtcaaccc
caaagggatagagtaatgaacaaatttaaaacggctactatagaaattttagtagctaca
gatgtagcagcccgaggaattgatattaatgatatagagatggtatttaattatgatatt
ccgcaagatgaggaatattatgtacacagaattgggagaacaggtcgagctggtagaaaa
ggtaaagccttcacctttgtatctgggaaagagatttataagttaaaatcaattcaaaag
tatactaagactaaaattaaaagaaagaagattccttctgctagtgatgtagaagaagtt
aagttagggttggttttagatagtgtagcagatatcatagaagcagatgatttaactaaa
gaaactaggttaattgaagaacaacttgaagaggattatgtttctattgatatagcagca
gctttattaaagttagttagggaagaagaaacgcaaacagatacagaaaatgttgaatac
tttggtaatactggagcagagccaggcatggttaggttatttataaatataggaaaaaaa
cagcatataagcccaggagatattgtaggagctattgctggagagactaatatctctggt
gatttagttgggttgattgatgtttatgatagatattcctttgtggaagttcctaaggag
catgggaaagaagtattaaagattatgaaaaatacgacaattaaaggtaagtctatagat
atcgaaccagctaacccaaaataa
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