Helicobacter heilmannii: BN341_12770
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Entry
BN341_12770 CDS
T02626
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hhm
Helicobacter heilmannii
Pathway
hhm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN341_12770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhm03019
]
BN341_12770
03009 Ribosome biogenesis [BR:
hhm03009
]
BN341_12770
Enzymes [BR:
hhm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN341_12770
Messenger RNA biogenesis [BR:
hhm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN341_12770
Ribosome biogenesis [BR:
hhm03009
]
Prokaryotic type
rRNA helicases
BN341_12770
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
UvrD-helicase
AAA_22
AAA_30
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
CCM11467
LinkDB
All DBs
Position
complement(1153847..1155244)
Genome browser
AA seq
465 aa
AA seq
DB search
MQAPVEENTQPTKSFKDLGLNSKILKSIAEVGFTQPSPIQEKAIPLVLAGKDVIAQAQTG
TGKTAAFALPIIQNLQNNKSVEALVITPTRELAMQVSDEIFKLGKSSRTRTICVYGGQSI
RKQCELLERNPQVMIATPGRLLDHLKNKRLKRFAPKVVVLDESDEMLDMGFLDDIEEIFD
YLPENAQILLFSATMPPPIKELANKILQNPVSVHIAPTHVTNADIAQRFYVINEHERNEA
IMRLLDKETPSKSIIFMRMKREVDELHQFLSAKGYKTTPLHGDMEQRARQTSIKAFKSKQ
ADVLIATDVASRGLDISDVSHVFNYHLPINTESYIHRIGRTGRAGKKGVAITLVTPLEYK
ELQRMQKDIGASLELYEIPHMDEDRLVKALSKVEVDAEVVSLYEQLTEQFEPSQLVLKLL
SLQFKSHKVDLDHIFTESKPSESKKPPRSSRPRKNGRFKDSRRKY
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcccccgttgaagaaaacacccagcccacgaagtcttttaaagatttgggctta
aactccaagattttaaaatctatcgccgaagtgggcttcacccagcctagccccatacaa
gaaaaggcgatccctttagtgctcgcaggcaaggatgtgatcgcccaagcccagaccggc
acgggcaaaactgccgccttcgccttgcccattatccaaaacttgcaaaacaacaagagc
gtggaagccctagtcatcacacccactagagagctggccatgcaagtgagcgatgagatt
tttaaactcggcaaaagctcacgcacccgcacgatatgcgtttatggggggcagagcatc
cgcaaacaatgcgagctactagagcgcaacccgcaggtgatgatcgccaccccgggcagg
ctcttagatcacctaaaaaacaaacgcttaaaacgctttgcacccaaagtcgtggtcttg
gatgaaagcgatgaaatgcttgacatgggctttttggatgacattgaagagatttttgac
tatttgcccgaaaatgcgcagattctcttgttttctgccaccatgcccccgcccattaaa
gagttggcgaataaaatcttgcaaaaccccgtgtccgtccacattgcccccacgcatgta
accaacgccgacattgcgcaacgcttttatgtgatcaatgaacatgagcgcaacgaagcg
atcatgcgcttgttggataaagaaacccccagcaaaagcatcatttttatgcggatgaaa
agagaagtggatgaattgcaccaatttttgagtgccaagggctataagaccacaccccta
cacggcgacatggaacaaagggcgaggcagacctccattaaggcctttaaatccaaacaa
gcggatgtcttgatcgccaccgatgtggcgagtcgggggctagacatcagtgatgtgagc
catgtctttaactaccacttacccataaacaccgaaagctatatccaccgcatcgggcgc
acggggcgggcgggcaaaaagggcgtggcgatcacacttgtaacccccttagagtataaa
gaattgcaacgcatgcaaaaggacatcggcgcgtctttagagctttacgaaatcccacac
atggatgaggatcgcttggtcaaagccctttcaaaggtggaagtggacgctgaggtcgtg
agcttatacgagcaactgaccgagcagtttgaaccctctcagttggtgctaaagctccta
agtctacaatttaagagccataaggtagatttagaccatatttttacagagtcaaagcca
agcgagtctaaaaaacccccaagaagttcaagacctcgcaaaaatgggcgttttaaggat
tccagacgcaagtattaa
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