Haloarcula hispanica N601: HISP_12175
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Entry
HISP_12175 CDS
T02949
Name
(GenBank) transcription initiation factor IIB 2
KO
K03124
transcription initiation factor TFIIB
Organism
hhn
Haloarcula hispanica N601
Pathway
hhn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hhn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HISP_12175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhn03021
]
HISP_12175
Transcription machinery [BR:
hhn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HISP_12175
Prokaryotic type
Archaeal type
TFB
HISP_12175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
Zn_ribbon_tTFIIB
Zn_ribbon_LysW
Anti-TRAP
DZR_2
HTH_Tnp_ISL3
DUF5817
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
AHB66725
UniProt:
V5TQ05
LinkDB
All DBs
Position
1:2318410..2319375
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AA seq
321 aa
AA seq
DB search
MSEHTRTRQQHEEQTTESTESESTACPECSGSLVIDDEHGETVCEDCGLVVESDEIDRGP
EWRAFDSSEKDEKSRVGAPTTNMMHDKGLSTNIDWRDKDAYGNSLSGKQRQKMQRLRKWN
ERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVST
ASVYAAARQAGVPRSLDEITEVSRVEKSEIARTYRYVVRELSLEVRPADPESYVPRFASS
LELSDEAEHRARQLLQNAKEQGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADIS
EVTIRNRYHELLEAEQDLPVA
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacacacacggacgcgacagcaacacgaggaacagacgactgagtcgacggaa
tcggagagcactgcgtgcccggagtgcagtggctcgctcgtcatcgacgacgaacacggc
gaaacggtctgtgaggactgtggcctcgtcgtcgagtccgacgaaatcgaccgcggcccc
gagtggcgcgcattcgactccagcgagaaagacgagaagtcccgcgtcggcgcaccgacg
acgaacatgatgcacgacaagggcctctcgacgaacattgactggcgcgacaaggacgcc
tacggcaactccctctctggcaaacaacgccagaagatgcagcgtctccgcaagtggaac
gagcggttccgcactcgcgactccaaggagcgcaacctcaagcaggccctcggtgaaatc
gaccgtatggcctccgcgctcggactgccagaaaacgtccgcgagacggccagcgtcatc
taccgccgcgcgctggacgaggacctgctccccggccgctccatcgagggcgtctcgacg
gcctccgtctacgccgccgcccgacaggctggcgtcccacgctcgctcgacgagattacg
gaggtctcccgcgtcgagaagagcgaaatcgcccggacctaccgctacgtcgtccgcgaa
ctctcgctcgaagtccgccccgcggaccccgagagctacgtcccgcggtttgcctcctcg
ctggaactgtctgacgaggccgaacaccgcgcccgccagctcctccagaacgccaaggaa
cagggcgtccactccggcaagtccccggtcggcctcgccgccgccgcagtgtacgcggcc
gccctgctgaccaacgagaagacgacccaggctgccgtctccgaggtcgccgacatctcc
gaggtcaccatccgcaaccgctaccacgaactgctggaagccgagcaggacctccccgtc
gcgtaa
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