Hydrogenobaculum sp. HO: HydHO_0148
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Entry
HydHO_0148 CDS
T02482
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hho
Hydrogenobaculum sp. HO
Pathway
hho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HydHO_0148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hho03019
]
HydHO_0148
03016 Transfer RNA biogenesis [BR:
hho03016
]
HydHO_0148
Enzymes [BR:
hho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HydHO_0148
Messenger RNA biogenesis [BR:
hho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HydHO_0148
Transfer RNA biogenesis [BR:
hho03016
]
Prokaryotic type
tRNA degradation factors
HydHO_0148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_2
DUF908
Motif
Other DBs
NCBI-ProteinID:
AGG14485
LinkDB
All DBs
Position
130891..133002
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AA seq
703 aa
AA seq
DB search
MMVKAEIENQDPIYIEANKYAHQADSSILISQGDTKVLITVCVSEEPLCGIDFAPLSVDY
RERSFAWGKIPGGFIKREGKPTDREVLVSRVIDRPLRPLVPKGFLNEIVVTCLTLSADDK
YDPDVLAITGASAALMCSSVPFEGPVAGMRVCRVNGEFIINPTYEQRKNSDIDIIMAISK
DAIVMVEGGAKEVEESVLLDALFFGLEKGQTLIKAQEELVDSLKPEKKPIGHIGLPEDTA
NKLKEITSSKILEAFSIEDKKERSKALKDVYAQAMQELGIPKEQEFDFAVSFKDLESQLM
REQILKSKKRIDGRKETDIRPITIEMHPLERPHGSAVFTRGQTQALATVTLAPKDEAQLV
ETIFEGETFKRFMLHYNFPPFSTGEARPWGPPRRREIGHGALAERALEPLLPKEEDFPYI
IRVVSDILESNGSSSMATVCAGSLALFDAGVPMKKHVAGIAMGLIKDGDNFVILTDILGD
EDHLGDMDFKVAGTRDGVTSVQMDIKIKGLSKDIMVKALNQAKEARMFILDKLYEAIPEP
NKEVSKYAPKAQVMKIPEDKVGLVIGPAGKNVKYIKEQFGASVWIDGANAYINAPTIEAV
NKAVDFINSLIQEVEVGGVYEGKVIRVENYGLFVEVLPGKVGLLHASAMTEKPTISVGDT
IKVKVMAIDEQNRLNLCSPDYQKPENQERPRKEQPNRKPHHRK
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgatggtaaaagctgagattgaaaaccaagaccctatatatatagaagcgaacaagtat
gcccatcaagcagatagtagcattcttatatctcaaggtgatacaaaagtactgattact
gtttgcgtatcggaagagccactttgtggcatagattttgcacctttatcggtagattat
agagagcgctcttttgcttggggtaaaataccaggagggtttataaaaagagagggaaaa
cccacagacagagaggtgcttgtatcaagggttatagatagacctttaaggcctttggtg
ccaaaaggctttttaaatgaaatagtggtgacatgccttacgttatcagcagatgacaag
tacgatccggatgttttggctataaccggagcttcagcggctttgatgtgttcttctgtg
ccttttgaaggacctgtagccggtatgagggtttgcagagtaaacggagaatttataata
aatcccacatacgagcaacgtaaaaatagcgatatagatatcataatggctatatcaaaa
gatgctatagtgatggtagaagggggagcaaaagaagtagaagaaagtgtacttttagac
gctttattttttggacttgaaaaaggacaaacccttataaaagcccaagaagagcttgta
gattctttaaaaccggagaaaaaaccaataggtcatataggtttacctgaagatacggca
aataagctaaaagaaattacttcctcaaagattttagaagcttttagtatagaagataaa
aaagaaaggtctaaagctttaaaagatgtttatgctcaagcaatgcaagaattaggtata
cccaaagagcaagagtttgattttgcggtatcttttaaagatttagaaagccagttgatg
agggagcaaattctaaaatccaaaaaacgtatagatggtagaaaggaaacagatataagg
ccaattaccatagagatgcatccactagaaagaccacacggttctgcagttttcacaaga
ggacaaactcaagctttagccacggtgactttggcaccaaaagacgaagctcagcttgtg
gaaacaatatttgaaggtgagacttttaaaaggtttatgcttcattacaactttccacct
tttagtacaggcgaagcaagaccttggggtcctccaagaagacgtgaaataggccatggt
gctctggcggaaagagctttagagcctcttttaccaaaagaagaggattttccttacatt
ataagagtagtttcagatattttagaatcaaacggttcaagctctatggctacggtgtgc
gcaggttctttggcgctttttgatgccggtgtacctatgaaaaagcatgtagctggcata
gctatgggtcttataaaagatggcgataactttgtaatacttaccgatatacttggagat
gaagaccatcttggagacatggatttcaaggtagctggcacaagggatggtgtaacaagc
gtccagatggatatcaagataaaaggtcttagcaaagatataatggtaaaagctttaaac
caagccaaagaagccagaatgtttatattggataaactttatgaagctataccagaacca
aacaaagaagtgtccaaatatgctcctaaagctcaagtgatgaaaattccagaggacaaa
gtgggtcttgtaataggtcctgctggaaagaatgtaaagtatataaaagagcaatttggt
gcaagtgtatggatagatggcgctaatgcttatataaatgcacctactatagaagctgta
aataaggcggtagattttataaactctttaattcaagaggtagaggtaggtggcgtatac
gaaggcaaagtaataagggtagaaaactacggcttgtttgtagaagtactgcctggcaaa
gtaggtcttttgcatgcatctgctatgactgaaaagcctactataagcgttggtgatact
ataaaagtaaaggttatggctatagacgaacaaaataggttaaacctatgtagtccagac
tatcaaaagccagaaaaccaagaaagaccaagaaaagaacaacccaataggaaaccccat
catagaaaatag
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