Hydrogenobaculum sp. HO: HydHO_0258
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Entry
HydHO_0258 CDS
T02482
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hho
Hydrogenobaculum sp. HO
Pathway
hho03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HydHO_0258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hho03021
]
HydHO_0258
03400 DNA repair and recombination proteins [BR:
hho03400
]
HydHO_0258
Enzymes [BR:
hho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HydHO_0258
Transcription machinery [BR:
hho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HydHO_0258
DNA repair and recombination proteins [BR:
hho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HydHO_0258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AGG14594
LinkDB
All DBs
Position
228949..233634
Genome browser
AA seq
1561 aa
AA seq
DB search
MKRGLLPFNKIKLLLASPEQILSWSHGEVKRPETLNYRTLKPEKEGLFCAKIFGPLKDYE
CLCGKYKGKRFEGTICDRCGVEVTRAYVRRERFGHITLATPCAHIWFLKSSPSKIGALLG
LSARDIEKVIYFESYLVVEYPTPDMEATFSNSENTIPVIKDGITYHVKLHVVTEEQYEKE
FAYSVDNRYESGMGAEFVRYVLSILDLETFAFKLKKILKPYTFGFEDLGPKMEAEHKKLY
EKIIMFLADRIKLYSIGIATSLNGVQMSLEDVIHGIISESIYLNIKTGEIANQDLGDDWY
TSKDAIRYRFEYVRGQNQNIPVFDKIQEDVRNIVLKDFSDTRVKNLVKTLKLVEGFLKSS
NRPEWMILTVLPVIPPELRPLVALDGGKFATSDLNDLYRRLINRNNRLKRLIDLDAPDII
VRNEKRMLQESVDVLIDNGKRGKVVSQHNRPLKSLSDYLKGKQGRFRQNLLGKRVDYSGR
SVIVVGPSLKMHQCGLPKIMALELFKPFVYRRLEEKGYATSIKNARKMVDQKQPEVWECL
EEVVKQHPVLLNRAPTLHRMSIQAFEPVLVEGKAIQLHPLVCPPFNADFDGDQMAVHVPL
GIEAQLESYILMLSTQNILSPANGKPIMLPSQDMVLGLFYASNYVKGAKGEGKVFFSKEE
AFLAFENKKIDIHAVIKVKIGDTFVETSIGRLLINEALPKGYRFVNEVLDKKSISKLIAD
IHKIYGSEITAQTLDRLKEFGFEMATRAGISIGIEDMKIPKAKKRLVDKAFNQMDEVLDQ
YRKGIITNKERYNKTIDIWSQTTEDVTKAMFSEIEKSEQIENNKKLPGLFNPIYMMANSG
ARGNKDQLRQLAGMRGLMAKHSGEFIETPITSNFREGLSVLEYFISTYGARKGLADTALK
TSFAGYLTRRLVDVAQDVVITEYDCGTKKYEVIEAIVESGEERISLKERLIGRVLAEDIY
DPNSKELIAKANEVVDEELAARIQQAGVVQVKARSVLTCESENGICSMCYGWDLSQRKLV
SPGEAVGIIAAQSIGEPGTQLTMRTFHIGGAATAQKVQSELVIENSGIIKFQGLKLLKNR
NGKFINISQEGVIFVLDSNGRTIERHTVPYAAEILFKDGSEVKQGDIVAKWDPFNTYIIA
ESSGELILKDIIVDVTVREEKDTLTGKTAIVVSFLRAKDAQLHSPRIVIKSEDGHEYSYD
LPVNSILNVPFEKLKTVWDKCLACSEAEKNDVQHNYYYLDSFVVHPGDIIARIPKETTKV
RDIVGGLPRVEELFEARKPKNPAIISEIDGIVKIYEDADEVMIISPKGTKKYDIKNEFIL
IKHGQEVKEGTKITDTIVSDVSGKAIVRAKGSKIVVYNKQTGQEKVYSVPKGKFLQVKDG
DYVKVGDQLTDGTPLLEEILKIKGIDELQKFLLKEVQMVYKLQGVDINDKHIEIIIRQML
RKRVIVDPGDSRFVANEEVDVTEFNKEVERIRKEGGKIPKAEPILVGITKAALSTKSWIS
AASFQETTRVLTEAASEGKVDDLSGIKENVIIGNLIPAGTGLEEYKNVKIEIVEHATQSK
K
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaggtttgttaccttttaataagataaagcttttacttgcatcaccagagcaa
atacttagttggagccacggagaagttaagcgccctgagactttgaattatcgaactcta
aaacctgaaaaagaaggtcttttctgtgcaaaaatatttgggcctttgaaagattacgaa
tgtttgtgtggaaaatataaaggtaagagatttgaaggtactatttgtgatagatgcggt
gttgaagtaacgagagcttacgttagaagagagcgttttggccatataacccttgctact
ccttgtgctcatatatggtttttaaaatcttctccatctaagataggtgcattgctcggt
ttgtctgctagagatatagaaaaggttatatattttgagtcttacttggtggtagaatac
ccaacccctgacatggaggctactttctcaaattcagaaaatactatccctgttataaaa
gatggtattacttatcatgtaaaactacatgttgttacggaagaacaatatgagaaggag
tttgcttacagcgttgacaacaggtacgaaagcggaatgggagctgaatttgtaagatat
gttttatctattttagatttagaaacatttgcttttaagctaaagaaaattttaaagcct
tacacctttggattcgaggatttgggtccaaagatggaagcagagcataaaaagctttac
gaaaagataataatgtttttagcagacaggataaagctttacagtataggtatcgctaca
tcgcttaacggtgtgcaaatgtctcttgaagacgtgattcatggtattataagcgagtca
atatacttaaacataaaaactggagaaattgccaatcaggatttaggggatgactggtat
acttcaaaagatgctataaggtatagatttgaatacgtaagaggacaaaatcaaaatatc
cccgtttttgataaaatacaagaagatgttagaaatatagttttgaaggacttttcggat
acaagggttaaaaatttagtaaaaaccttaaaacttgtagaaggctttttgaaatcttcc
aacagacccgaatggatgatattaacagttttaccagtaatacctccagagttaaggcca
cttgtggctttagacgggggtaagtttgctacatctgatttaaacgatctttacagaagg
cttataaatagaaacaaccgcttgaaaaggcttatagacttagatgctcctgatatcata
gtgagaaatgaaaagagaatgctccaagaatcagtggatgttcttatagacaacggcaag
agaggtaaagtagtaagtcaacacaatagaccacttaaaagtttatcagattatctcaaa
ggaaagcaaggcagatttagacaaaaccttttaggtaagagagtcgattattctggccgt
tctgtcatagtggtaggaccttctttgaagatgcatcagtgtggtttgccaaagataatg
gctttagagttgttcaaaccgttcgtttatagaagacttgaggaaaaaggttatgccact
tctataaaaaatgctagaaagatggtagatcaaaaacagccagaagtatgggaatgttta
gaagaagttgtcaagcaacatccagtattgctaaacagagctcctacgctacacaggatg
tctattcaagcctttgaacctgttttggtggaaggcaaggcaattcaacttcatccgttg
gtatgccctccatttaacgcagactttgatggtgaccaaatggctgtgcatgtacctctt
ggtatagaggctcagctagaatcttatatactaatgctttcaactcaaaacatactctca
cctgctaacggaaagccaattatgttgccatctcaagatatggtgttgggacttttttac
gcttcaaactatgtaaaaggtgctaagggagaaggcaaagtattcttctctaaagaagag
gcgtttttggcttttgaaaacaaaaagatagatattcatgctgttataaaggtgaagata
ggggatacttttgtagagacaagcataggtagacttcttataaatgaggcattgccaaag
ggttatagatttgtgaacgaagttcttgataagaaaagcatatcgaagcttatagccgat
attcacaaaatttatggttcggaaatcactgctcaaactcttgatagactcaaggaattt
ggttttgaaatggctacaagggctggaatatctataggtattgaagatatgaagatacca
aaagccaagaaacgtcttgtagataaagcttttaaccaaatggatgaagtccttgatcaa
tatagaaaaggtataataacaaacaaagaaaggtacaacaaaactatagatatttggtca
caaaccacggaagatgttacaaaggctatgttctctgaaatagaaaaatctgaacaaata
gagaacaacaagaaattgccaggtcttttcaatcctatatatatgatggcaaactcaggt
gctcgtggtaacaaagaccagttaagacagttagcaggtatgagaggtcttatggcaaag
cactccggtgaatttatagaaacgccaattacctcaaactttagagaaggattatctgta
ttagaatacttcatatcaacttacggtgctagaaaaggtcttgctgataccgctctaaaa
acatcttttgctggttatctaactagaagacttgtagatgtggctcaagatgtggttatc
acagaatacgattgtggtactaagaaatatgaagttatagaagcgatagtagaaagtggt
gaagaaagaatatctttaaaagaaagattgataggaagagttttggctgaagatatatac
gacccaaacagcaaagagcttatagcaaaagccaacgaagttgtagatgaagagcttgca
gctaggatacagcaagccggtgtagtgcaagttaaagccaggtccgtactaacctgcgaa
tctgaaaacggtatatgctctatgtgctatggatgggatttatctcaaagaaaacttgtt
tctcctggagaggctgtaggtattatagctgctcaatcaataggtgagcctggtactcag
cttacgatgagaacattccacataggtggtgctgctaccgctcaaaaggtacagagcgaa
ctcgttatagaaaatagtggtattataaaattccaaggtttaaagcttttaaagaataga
aacggtaagtttataaacatatctcaagaaggtgtaatatttgtattggattcaaacgga
agaactatagaaagacacacagttccttatgctgcagagattttgtttaaagatggctca
gaagtaaaacaaggggatatagtggcaaaatgggatccatttaacacatacataatagct
gagtcaagcggagagcttattttaaaggatattatagtagatgttacagtaagagaagaa
aaagacactcttactggtaaaacagccatagtagtatctttcttaagggctaaagacgct
caactgcactcaccaagaatagttataaagtctgaagatggtcatgagtattcttatgat
ttaccggtaaactctatattaaatgtaccattcgaaaagcttaaaaccgtatgggataag
tgtttagcttgttctgaggctgaaaagaatgatgttcagcacaattactattatttagat
agctttgtagtacacccaggggatattatagctcgtattcctaaagaaacaacgaaagtc
agagacatagtaggaggtcttccaagggttgaggagttgtttgaggccaggaaacctaaa
aaccccgctattatatctgagatagatggtatagttaagatatacgaagacgcagatgaa
gtaatgataatatcgccaaaaggcaccaaaaaatacgatataaagaacgagtttattttg
attaaacatggtcaagaggtgaaagagggtacaaaaattacagataccatagttagcgat
gttagcggcaaagctatagtaagggcaaaaggtagtaagatagtggtttacaacaagcag
acaggccaagaaaaagtttattctgtgccaaaaggtaagtttttacaagtaaaagacggt
gattatgtaaaagttggtgatcaattaacggatggtactccgcttcttgaagagatactt
aaaataaagggtatagacgagcttcaaaagttcttattaaaagaagttcagatggtgtat
aaacttcaaggtgttgatataaacgataaacatatagagataataattcgtcaaatgcta
aggaaaagagtaatagtagatccaggggatagcagatttgtggcgaacgaagaggttgat
gtaacagagttcaacaaagaggtggaaagaattagaaaagaaggtggtaaaataccaaaa
gcagagcctatattggtgggtattactaaggctgcgctgtctaccaaaagctggatatct
gctgcttctttccaagagactactagagttttgacagaagctgctagcgaaggaaaagtt
gatgatttgtcaggtataaaagaaaatgttataattggtaatcttatacctgccggtact
ggtcttgaagagtacaaaaatgtgaaaatagagattgtagagcatgctacacagtctaag
aagtaa
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