Hydrogenobaculum sp. HO: HydHO_0292
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Entry
HydHO_0292 CDS
T02482
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hho
Hydrogenobaculum sp. HO
Pathway
hho03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hho00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HydHO_0292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hho03021
]
HydHO_0292
03400 DNA repair and recombination proteins [BR:
hho03400
]
HydHO_0292
Enzymes [BR:
hho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HydHO_0292
Transcription machinery [BR:
hho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HydHO_0292
DNA repair and recombination proteins [BR:
hho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HydHO_0292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_5
DUF7443
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
AGG14628
UniProt:
M1QHH4
LinkDB
All DBs
Position
251770..252729
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AA seq
319 aa
AA seq
DB search
MKEFIFPMKIYWEEKDKNYGRFVVEPLERGYGTTIGNALRRVLLSSIYGSAITAVKIEGV
QHEFSTIEGVQEDVLQIIANLKNVRFDLKDSDLEILYLEKNAPGVVLASDIKTPPNVTII
NKDAYIATINSANTTLKMEIRIERGKGYVMSDEMEQIGEAGWIVLDADFSPIKVVAFRVE
ATRVGDRTDYDKLTFELTTNGVVSPETAVQQAVELIVKHMNMLTNISYEVPTLPEPMPPD
ELMEKLTFSIEELDISQRALNSLKRIGVTTIGELVQLTEDELKSSKNIGRKALTEIKEAL
KNMGFSLGMNIGEQRGSEV
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagtttatttttccgatgaaaatatattgggaagaaaaagataaaaattacggt
aggtttgttgtggaacccttagaaaggggctatggcaccacaataggcaatgctcttaga
agggttttactctcttctatatacggtagtgctatcaccgctgtaaagatagaaggtgtt
caacacgagttttctactattgaaggtgtccaagaagatgttttacagattatagcaaat
cttaaaaatgttagatttgacttgaaagattctgatttagagattttatatttagaaaaa
aatgcgccaggtgttgttttagcttccgatatcaaaactcctccaaatgtcaccattata
aacaaagatgcttacattgctacgataaactctgctaatacaactcttaaaatggaaata
cgtatagaaagaggcaaaggttatgtcatgtctgatgaaatggagcaaataggagaagct
ggatggatagtgcttgatgctgatttttctcctataaaagttgtagcttttagagtagag
gctactagagtaggcgatagaacagattacgataagcttacttttgagcttaccactaac
ggtgttgtatctccagagactgctgttcaacaagctgtagaacttatagtgaaacatatg
aacatgcttacaaatatatcctatgaagtacctactttgccagagcctatgccccctgat
gagctaatggaaaaacttacattttctatagaagagcttgatatttctcaaagagcttta
aattcactaaaaagaataggggtaactaccataggagaacttgtacagcttacagaggat
gagcttaaaagctctaaaaacataggtagaaaagctttgaccgagataaaagaagctctt
aaaaatatgggtttttctttaggtatgaacataggagaacaaagaggttcagaggtgtaa
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