Hydrogenobaculum sp. HO: HydHO_0298
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Entry
HydHO_0298 CDS
T02482
Symbol
rhlB
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hho
Hydrogenobaculum sp. HO
Pathway
hho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HydHO_0298 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hho03019
]
HydHO_0298 (rhlB)
03009 Ribosome biogenesis [BR:
hho03009
]
HydHO_0298 (rhlB)
Enzymes [BR:
hho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HydHO_0298 (rhlB)
Messenger RNA biogenesis [BR:
hho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HydHO_0298 (rhlB)
Ribosome biogenesis [BR:
hho03009
]
Prokaryotic type
rRNA helicases
HydHO_0298 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AGG14634
UniProt:
M1RIK6
LinkDB
All DBs
Position
255383..256477
Genome browser
AA seq
364 aa
AA seq
DB search
MSLFSKLSLELQKALEDAGYKEPTPIQRDTIPLALEGYDILGQAATGTGKTGAFAIPIVE
KLQKGKPGVKALVLTPTRELAIQVKEQIYMLTKYKRLSSYVFYGGTSVKQNLDILQNKNV
DILIGTPGRIKDLIDRKALNLSNVEYLVLDEFDQMLDMGFIEDIEYIISFLPKERTTYMF
SATVPNRIELLAKRFLKSDFKFEKVPSVELKPNIEEKMIKLSSPGEKIHELMHIIDTHPM
EKMLVFVKTKKDAKDLFFLLTKKGIRVQALHGDLTQRQREKALSAFKSGAVSILIATDVA
ARGLDIKDVGVVINYNIPEDPELYIHRIGRTGRIGKSGKAFSLICPEDSKALLRIKKLRS
KISV
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgtcattattctcaaaacttagtttagaactacaaaaagctttggaggatgctggatac
aaagaaccaacacccattcaaagggataccattcctttagcgttggaaggttacgatatc
ttgggacaagctgccaccgggaccgggaagacaggagcttttgctataccaatagtggaa
aagcttcaaaagggaaaaccaggtgttaaagctcttgtgctgacacccactagagagcta
gctatacaggtaaaagagcaaatatacatgcttaccaaatataaaaggctttcttcttac
gtattttatggtgggacttctgtaaaacagaatttggatattttgcaaaataaaaacgtg
gatatcttaataggaactcctggacgtataaaagaccttattgataggaaggctttaaat
ttgtcaaacgtagaatatcttgttttggatgaatttgatcaaatgcttgatatgggcttt
atagaagacatagaatatataataagcttcttaccaaaagaaaggaccacttatatgttt
tctgccactgtgccaaaccgtattgagcttttagcaaaaagatttttaaagagtgatttc
aaatttgagaaagtgccatcggtagagttaaaaccaaacatagaagagaagatgataaag
ttatcttcacctggagaaaaaatacacgagcttatgcatataatagacacccatcctatg
gaaaaaatgcttgtttttgtaaaaactaaaaaagatgcgaaagatttatttttcttgctt
acgaaaaaaggcataagagttcaagctcttcatggagatcttacgcaaagacaaagagaa
aaagctctaagtgcatttaaatctggtgctgttagcatattgatagctaccgatgttgct
gccagaggccttgatataaaagacgtaggagttgtaataaactacaacataccagaagat
ccagagctttacatacataggataggaagaactggtagaataggcaaaagcggtaaagcg
ttttctttaatatgtccagaagattccaaagcgcttttacgcataaaaaagcttaggtca
aaaatatcggtttaa
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